CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra027620
(
Brassica rapa
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Bra027620
T199998_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra027620.1-P
GRAS
254
625
LVNLLTGCLEAIRTRNIAAINHLIARTGELASPRGTTPMTRLISYYIEALALRVSRMWPHIFHIAPPREFERTLEDDDAWRFLNQATPIPKFIHYTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRSNPPRHVRITGVGESKHELNETGDRLRGFAEAMNLPFEFHPVVDRLEDVRLWMLHVKEGEAVAVNCVMQIHKTLYDGAAFRNFVGLVRSTNPVAVVIAEQEAEHDSAQLETRVCNSLKYYSAVFDVMHTHLGADSLMRVKIEEVLFGREIRNIVAWEGSHRQERHVGFGQWRRMMEQLGFRSLGVSEREVLQSKMLLRMYGDGDEGFFNVERSAEEGDGGGLTLGWLDQPLYTISAWG
Links
Other
GRAS
family TFs
Other
Brassica rapa
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo9g028850
Brassica oleracea
Bo9g028850
N
0.940
Thhalv10023324m.g
Eutrema salsugineum
Thhalv10023324m.g
N
0.882
Bo00795s120
Brassica oleracea
Bo00795s120
N
0.873
Bra026999
Brassica rapa
Bra026999
N
0.871
SCL28
Arabidopsis thaliana
AT1G63100
N
0.860
Carubv10019945m.g
Capsella rubella
Carubv10019945m.g
N
0.845
fgenesh1_pg.C_scaffold_2000170
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2000170
N
0.845
Bostr.22157s0011
Boechera stricta
Bostr.22157s0011
N
0.845
Cagra.9501s0015
Capsella grandiflora
Cagra.9501s0015
N
0.843
30190.m011131
Ricinus communis
30190.m011131
N
0.711
Ciclev10019186m.g
Citrus clementina
Ciclev10019186m.g
N
0.705
orange1.1g005954m.g
Citrus sinensis
orange1.1g005954m.g
N
0.704