CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400013356
(
Solanum tuberosum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
PGSC0003DMG400013356
T201121_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400034763
GRAS
164
534
LKELLDACAEAVSDADISTAEALMRALEQRVSVSGEPMERLGAYMLEGIRARLLSSGSIIYKKLKCKEPTGSELLSYMQVIFNMCPYYKFACMSANVVIREAMMNENRIHIIDFQIAQGSQWIFLLHDLARRPGGPPFVRITGVDDDESAYARGGGLQLVGERLAEVAKSCGVPFEFHGAALSGCEVQLENLRVKHGEALAVNFPYMLHHMPDESVSTINHRDRLLRLVKSLSPKIVTLVEQESNTNTAPFLPRFRETLDYYTAMFESIDAARPRDDKERISAEEHCVARDVVNIIACEGADRVERHELFGKWRLRLVMAGFTPCQLSPSVGETIKDMLKEYNPNYRYAESEGALYLGWKNRALATSSAWR
PGSC0003DMT400034764
GRAS
164
534
LKELLDACAEAVSDADISTAEALMRALEQRVSVSGEPMERLGAYMLEGIRARLLSSGSIIYKKLKCKEPTGSELLSYMQVIFNMCPYYKFACMSANVVIREAMMNENRIHIIDFQIAQGSQWIFLLHDLARRPGGPPFVRITGVDDDESAYARGGGLQLVGERLAEVAKSCGVPFEFHGAALSGCEVQLENLRVKHGEALAVNFPYMLHHMPDESVSTINHRDRLLRLVKSLSPKIVTLVEQESNTNTAPFLPRFRETLDYYTAMFESIDAARPRDDKERISAEEHCVARDVVNIIACEGADRVERHELFGKWRLRLVMAGFTPCQLSPSVGETIKDMLKEYNPNYRYAESEGALYLGWKNRALATSSAWR
Links
Other
GRAS
family TFs
Other
Solanum tuberosum
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Solyc11g012510.1
Solanum lycopersicum
Solyc11g012510.1
N
0.962
PGSC0003DMG400023556
Solanum tuberosum
PGSC0003DMG400023556
N
0.829
Solyc04g014830.1
Solanum lycopersicum
Solyc04g014830.1
N
0.816
mgf007403m
Mimulus guttatus
mgf007403m
N
0.778
PGSC0003DMG400008442
Solanum tuberosum
PGSC0003DMG400008442
N
0.775
SCL13
Vitis vinifera
VIT_00s0463g00020
N
0.751
Ciclev10014811m.g
Citrus clementina
Ciclev10014811m.g
N
0.724
mgf018899m
Mimulus guttatus
mgf018899m
N
0.724
orange1.1g008984m.g
Citrus sinensis
orange1.1g008984m.g
N
0.721
PRUPE_ppa003910mg
Prunus persica
PRUPE_ppa003910mg
N
0.718
Pm012494
Prunus mume
Pm012494
N
0.718
TCM_030393
Theobroma cacao
TCM_030393
N
0.715
MDP0000254936
Malus domestica
MDP0000254936
N
0.707
PK04573.1
Cannabis sativa
PK04573.1
N
0.702