POPTR_0005s14540 (Populus trichocarpa)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03514 (GRAS) IPR005202 POPTR_0005s14540 T201193_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RGL2
M02031_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Weirauch et al.(2014)
pTH8681
0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s14540.1 GRAS 236 599

Links

Other GRAS family TFs
Other Populus trichocarpa TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RGL2 Arabidopsis thaliana AT3G03450 D 0.712
Ca_13295 Cicer arietinum Ca_13295 I 0.812
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.850
MDP0000669451 Malus domestica MDP0000669451 I 0.892
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.853
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I 0.781
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.862
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.862
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.964
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.867
Carubv10015212m.g Capsella rubella Carubv10015212m.g I 0.708
Bostr.19046s0061 Boechera stricta Bostr.19046s0061 I 0.706
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.903
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.862
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.845
Thhalv10020431m.g Eutrema salsugineum Thhalv10020431m.g I 0.717
RGL2 Arabidopsis lyrata fgenesh2_kg.3__292__AT3G03450.1 I 0.740
Thhalv10015535m.g Eutrema salsugineum Thhalv10015535m.g I 0.706
Pm014329 Prunus mume Pm014329 I 0.875
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N 0.770
Cagra.0463s0002 Capsella grandiflora Cagra.0463s0002 N 0.709
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.828
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N 0.751
PK14700.1 Cannabis sativa PK14700.1 N 0.792
Carubv10008833m.g Capsella rubella Carubv10008833m.g N 0.751
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N 0.751
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.828
Bostr.26959s0284 Boechera stricta Bostr.26959s0284 N 0.701
Si039400m.g Setaria italica Si039400m.g N 0.731
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N 0.770
Aquca_002_01300 Aquilegia coerulea Aquca_002_01300 N 0.723
mgf025772m Mimulus guttatus mgf025772m N 0.712
mgf008289m Mimulus guttatus mgf008289m N 0.770
Cucsa.280310 Cucumis sativus Cucsa.280310 N 0.765
Cucsa.006260 Cucumis sativus Cucsa.006260 N 0.795
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N 0.770
Thhalv10018436m.g Eutrema salsugineum Thhalv10018436m.g N 0.706
Carubv10018534m.g Capsella rubella Carubv10018534m.g N 0.737
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N 0.770
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.884
Pavir.Ia00840 Panicum virgatum Pavir.Ia00840 N 0.731
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N 0.748
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.881
MDP0000237978 Malus domestica MDP0000237978 N 0.753
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.850
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.853
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N 0.789
SapurV1A.0230s0190 Salix purpurea SapurV1A.0230s0190 N 0.766
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.778
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N 0.767
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N 0.751
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.770
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N 0.745
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.884
Carubv10020171m.g Capsella rubella Carubv10020171m.g N 0.706
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N 0.731
GAI Arabidopsis thaliana AT1G14920 N 0.748
GRMZM2G024973 Zea mays GRMZM2G024973 N 0.726
GRMZM2G144744 Zea mays GRMZM2G144744 N 0.723
LPERR03G26000 Leersia perrieri LPERR03G26000 N 0.723
MLOC_67940 Hordeum vulgare MLOC_67940 N 0.717
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.806
OB03G38380 Oryza brachyantha OB03G38380 N 0.717
OBART03G31370 Oryza barthii OBART03G31370 N 0.723
OGLUM03G31610 Oryza glumaepatula OGLUM03G31610 N 0.723
OMERI03G27970 Oryza meridionalis OMERI03G27970 N 0.723
GLYMA08G10140 Glycine max GLYMA08G10140 N 0.740
GLYMA05G27190 Glycine max GLYMA05G27190 N 0.737
RGA1 Arabidopsis lyrata fgenesh2_kg.5__65__AT2G01570.1 N 0.767
RGL1 Arabidopsis thaliana AT1G66350 N 0.712
RGA Arabidopsis thaliana AT2G01570 N 0.767
SLR1 Oryza indica BGIOSGA013420 N 0.723
Bo2g052880 Brassica oleracea Bo2g052880 N 0.712
Bo7g078550 Brassica oleracea Bo7g078550 N 0.762
Bra024875 Brassica rapa Bra024875 N 0.762
BRADI1G11090 Brachypodium distachyon BRADI1G11090 N 0.720
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N 0.751
RGL1 Arabidopsis lyrata fgenesh2_kg.2__868__AT1G66350.1 N 0.712
ONIVA03G32670 Oryza nivara ONIVA03G32670 N 0.723
OPUNC03G28530 Oryza punctata OPUNC03G28530 N 0.723
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.806
Ca_05046 Cicer arietinum Ca_05046 N 0.765
Cla003996 Citrullus lanatus Cla003996 N 0.767
Cla020062 Citrullus lanatus Cla020062 N 0.820
Pm006304 Prunus mume Pm006304 N 0.778
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.792
28677.m000055 Ricinus communis 28677.m000055 N 0.884
29692.m000540 Ricinus communis 29692.m000540 N 0.801
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.784
Traes_4BS_2EE4988CD Triticum aestivum Traes_4BS_2EE4988CD N 0.717
TCM_019165 Theobroma cacao TCM_019165 N 0.820
TCM_010965 Theobroma cacao TCM_010965 N 0.795
ORGLA03G0290200 Oryza glaberrima ORGLA03G0290200 N 0.723
ORUFI03G32650 Oryza rufipogon ORUFI03G32650 N 0.723
SLR1 Oryza sativa OS03G0707600 N 0.723
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.823
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.792
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.787
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N 0.773
Sb01g010660 Sorghum bicolor Sb01g010660 N 0.723
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.823
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.792