CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0005s20890
(
Populus trichocarpa
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
POPTR_0005s20890
T201196_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0005s20890.1
GRAS
214
584
PRRLLFECANAISEGNIEKASALINELRQLVSIQGDPPQRIAAYMVEGLAAHMAESGMYLYKALKCKEPPSDDRLAAMQILFEICPCFKFGFMAANGAMIEAFKGERRVHIIDFDINQGSQYITLIQTLANQPGKLPNLRLTGVDDPESVQRPVGGLRNIGRRLEKLAEALKVPFEFHAVASKTSVVSPSMLNCKPGEALVVNFAFQLHHMPDESVSTVNERDQLLRMAKSLNPKLVTVVEQDVNTNTAPFFPRFTEAYNYYSAVFDSLDATLPRESQDRLNVEKQCLARDIVNIVACEGEERIERYEVAGKWRARMKMAGFTPCSISHSVVDLIRKLIKQYSDRYMLKEEVGALHFGWEDKSLVFASAWK
Links
Other
GRAS
family TFs
Other
Populus trichocarpa
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0261s0120
Salix purpurea
SapurV1A.0261s0120
N
0.946
POPTR_0002s07430
Populus trichocarpa
POPTR_0002s07430
N
0.932
SapurV1A.0267s0240
Salix purpurea
SapurV1A.0267s0240
N
0.905
cassava26784.m1
Manihot esculenta
cassava26784.m1
N
0.873
cassava42388.valid.m1
Manihot esculenta
cassava42388.valid.m1
N
0.862
29648.m001919
Ricinus communis
29648.m001919
N
0.859
chr1.CM0982.460.nd
Lotus japonicus
chr1.CM0982.460.nd
N
0.833
orange1.1g007853m.g
Citrus sinensis
orange1.1g007853m.g
N
0.827
Ciclev10000671m.g
Citrus clementina
Ciclev10000671m.g
N
0.827
Gorai.005G083700
Gossypium raimondii
Gorai.005G083700
N
0.822
evm.TU.supercontig_26.96
Carica papaya
evm.TU.supercontig_26.96
N
0.821
TCM_035362
Theobroma cacao
TCM_035362
N
0.818
gene01015-v1.0-hybrid
Fragaria vesca
gene01015-v1.0-hybrid
N
0.816
Gorai.009G251800
Gossypium raimondii
Gorai.009G251800
N
0.810
MDP0000727836
Malus domestica
MDP0000727836
N
0.810
Lus10042776.g
Linum usitatissimum
Lus10042776.g
N
0.808
PRUPE_ppa003310mg
Prunus persica
PRUPE_ppa003310mg
N
0.805
MDP0000859087
Malus domestica
MDP0000859087
N
0.805
Lus10029747.g
Linum usitatissimum
Lus10029747.g
N
0.802
Pm022704
Prunus mume
Pm022704
N
0.797
MTR_1g029420
Medicago truncatula
MTR_1g029420
N
0.789
Eucgr.F04276
Eucalyptus grandis
Eucgr.F04276
N
0.780
PK29476.1
Cannabis sativa
PK29476.1
N
0.780
VIT_04s0044g01370
Vitis vinifera
VIT_04s0044g01370
N
0.778
GLYMA06G12701
Glycine max
GLYMA06G12701
N
0.778
SCL1
Vitis vinifera
VIT_18s0001g15270
N
0.778
GLYMA04G42090
Glycine max
GLYMA04G42090
N
0.770
Aquca_014_00370
Aquilegia coerulea
Aquca_014_00370
N
0.770
Cucsa.079150
Cucumis sativus
Cucsa.079150
N
0.762
MTR_3g089055
Medicago truncatula
MTR_3g089055
N
0.753
Cla015267
Citrullus lanatus
Cla015267
N
0.751
GSMUA_Achr10G17290_001
Musa acuminata
GSMUA_Achr10G17290_001
N
0.751
Ca_03920
Cicer arietinum
Ca_03920
N
0.748
PDK_20s1392371g003
Phoenix dactylifera
PDK_20s1392371g003
N
0.748
mgf010500m
Mimulus guttatus
mgf010500m
N
0.745
GLYMA13G09220
Glycine max
GLYMA13G09220
N
0.743
SCL1
Arabidopsis lyrata
fgenesh2_kg.1__2335__AT1G21450.1
N
0.743
GLYMA14G27290
Glycine max
GLYMA14G27290
N
0.741
Bra017915
Brassica rapa
Bra017915
N
0.740
GSMUA_Achr3G02410_001
Musa acuminata
GSMUA_Achr3G02410_001
N
0.737
PGSC0003DMG400024853
Solanum tuberosum
PGSC0003DMG400024853
N
0.737
SCL1
Arabidopsis thaliana
AT1G21450
N
0.735
Bo5g034360
Brassica oleracea
Bo5g034360
N
0.734
Thhalv10007142m.g
Eutrema salsugineum
Thhalv10007142m.g
N
0.734
Solyc04g064550.1
Solanum lycopersicum
Solyc04g064550.1
N
0.734
AMTR_s00186p00018500
Amborella trichopoda
AMTR_s00186p00018500
N
0.734
Cagra.1632s0036
Capsella grandiflora
Cagra.1632s0036
N
0.732
Carubv10008658m.g
Capsella rubella
Carubv10008658m.g
N
0.724
Bostr.25570s0024
Boechera stricta
Bostr.25570s0024
N
0.724
Bo7g059410
Brassica oleracea
Bo7g059410
N
0.707
Bra012280
Brassica rapa
Bra012280
N
0.707