PAT1 (Arabidopsis lyrata)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03514 (GRAS) IPR005202 scaffold_801100.1 T201394_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_801100.1 GRAS 119 490

Links

Other GRAS family TFs
Other Arabidopsis lyrata TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.748
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.724
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N 0.772
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.797
Eucgr.F03523 Eucalyptus grandis Eucgr.F03523 N 0.705
evm.TU.supercontig_12.194 Carica papaya evm.TU.supercontig_12.194 N 0.710
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.837
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N 0.724
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.818
Carubv10026289m.g Capsella rubella Carubv10026289m.g N 0.967
Carubv10015685m.g Capsella rubella Carubv10015685m.g N 0.723
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N 0.967
cassava8885.m1 Manihot esculenta cassava8885.m1 N 0.808
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.794
mgf013039m Mimulus guttatus mgf013039m N 0.705
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.767
Aquca_028_00248 Aquilegia coerulea Aquca_028_00248 N 0.737
Bostr.19424s0023 Boechera stricta Bostr.19424s0023 N 0.736
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N 0.962
Cagra.1158s0007 Capsella grandiflora Cagra.1158s0007 N 0.720
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.821
Gorai.002G096300 Gossypium raimondii Gorai.002G096300 N 0.737
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.813
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.829
Thhalv10002541m.g Eutrema salsugineum Thhalv10002541m.g N 0.734
Thhalv10004053m.g Eutrema salsugineum Thhalv10004053m.g N 0.951
Thhalv10011379m.g Eutrema salsugineum Thhalv10011379m.g N 0.707
PK09018.1 Cannabis sativa PK09018.1 N 0.778
PK15082.1 Cannabis sativa PK15082.1 N 0.713
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N 0.727
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N 0.718
SapurV1A.0030s0420 Salix purpurea SapurV1A.0030s0420 N 0.743
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.772
MDP0000804652 Malus domestica MDP0000804652 N 0.810
Gorai.009G446100 Gossypium raimondii Gorai.009G446100 N 0.724
Lus10003772.g Linum usitatissimum Lus10003772.g N 0.768
Lus10006369.g Linum usitatissimum Lus10006369.g N 0.764
Lus10012323.g Linum usitatissimum Lus10012323.g N 0.759
Lus10016596.g Linum usitatissimum Lus10016596.g N 0.741
MDP0000152670 Malus domestica MDP0000152670 N 0.808
MDP0000205236 Malus domestica MDP0000205236 N 0.713
MDP0000284679 Malus domestica MDP0000284679 N 0.713
PDK_20s1421311g003 Phoenix dactylifera PDK_20s1421311g003 N 0.731
AMTR_s00088p00161000 Amborella trichopoda AMTR_s00088p00161000 N 0.729
Bra020715 Brassica rapa Bra020715 N 0.943
Bra026077 Brassica rapa Bra026077 N 0.726
Bra036185 Brassica rapa Bra036185 N 0.924
Bra037509 Brassica rapa Bra037509 N 0.936
SCL5 Arabidopsis lyrata fgenesh2_kg.1__4145__AT1G50600.1 N 0.705
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.805
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.810
GSMUA_Achr8G03610_001 Musa acuminata GSMUA_Achr8G03610_001 N 0.722
Bra018860 Brassica rapa Bra018860 N 0.705
Bra015156 Brassica rapa Bra015156 N 0.717
Bo9g009260 Brassica oleracea Bo9g009260 N 0.932
SCL5 Arabidopsis thaliana AT1G50600 N 0.705
SCL21 Arabidopsis thaliana AT2G04890 N 0.734
PAT1 Arabidopsis thaliana AT5G48150 N 0.984
Bo2g149670 Brassica oleracea Bo2g149670 N 0.949
Bo6g022330 Brassica oleracea Bo6g022330 N 0.705
Bo7g030310 Brassica oleracea Bo7g030310 N 0.717
Bo7g089080 Brassica oleracea Bo7g089080 N 0.938
Bo9g009240 Brassica oleracea Bo9g009240 N 0.940
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.805
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N 0.794
PGSC0003DMG400022187 Solanum tuberosum PGSC0003DMG400022187 N 0.726
Ca_09786 Cicer arietinum Ca_09786 N 0.805
Cla001429 Citrullus lanatus Cla001429 N 0.783
Cla004565 Citrullus lanatus Cla004565 N 0.702
Pm012019 Prunus mume Pm012019 N 0.740
Pm015021 Prunus mume Pm015021 N 0.821
27613.m000642 Ricinus communis 27613.m000642 N 0.759
29949.m000124 Ricinus communis 29949.m000124 N 0.806
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.767
SCL5 Vitis vinifera VIT_19s0090g01740 N 0.753
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.821
TCM_030733 Theobroma cacao TCM_030733 N 0.759
SCL5 Populus trichocarpa POPTR_0001s37270 N 0.745
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N 0.827
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.824
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N 0.749
SCL21 Arabidopsis lyrata scaffold_303269.1 N 0.731
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.794
Solyc07g065270.1 Solanum lycopersicum Solyc07g065270.1 N 0.734
TCM_002319 Theobroma cacao TCM_002319 N 0.821
cassava34106.m1 Manihot esculenta cassava34106.m1 N 0.798