CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla004494
(
Citrullus lanatus
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Cla004494
T201909_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla004494
GRAS
261
635
LISLLMACVEAIGSKNIGLINHLIDKLGSQASPRGSSPITRLIAYYTEALAVRVSRVWPQVFHITTPREYDRMEDDTGTALRLLNEVSPIPKFIHFTANEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGESKQELNETGDRLAGFAEALRLPFEFHAVVDRLEDVRLWMLHVKEQESVGVNCMLQLHKTLYDGNGGALRDFLGLIRSTNPSIVVMAEQEAEHNEPRLESRVTATLKYYAAIFDSLDASLPPDSSARLKIEDMFGREIRNMIACEGRERYERHVGFKKWKKDMEQQGGLQCVGICDNRELLQTQFLLKMYSSAHGFKVTKIEEEEGAAQAICLTWEDQPLYSVSAWS
Links
Other
GRAS
family TFs
Other
Citrullus lanatus
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cucsa.041620
Cucumis sativus
Cucsa.041620
N
0.942
VIT_02s0025g04000
Vitis vinifera
VIT_02s0025g04000
N
0.770
PRUPE_ppa017030mg
Prunus persica
PRUPE_ppa017030mg
N
0.762
Pm023754
Prunus mume
Pm023754
N
0.762
POPTR_0003s12240
Populus trichocarpa
POPTR_0003s12240
N
0.762
TCM_016186
Theobroma cacao
TCM_016186
N
0.756
Gorai.008G243900
Gossypium raimondii
Gorai.008G243900
N
0.753
SapurV1A.1081s0090
Salix purpurea
SapurV1A.1081s0090
N
0.753
cassava41178.m1
Manihot esculenta
cassava41178.m1
N
0.751
cassava2243.valid.m1
Manihot esculenta
cassava2243.valid.m1
N
0.748
POPTR_0001s08850
Populus trichocarpa
POPTR_0001s08850
N
0.745
gene32389-v1.0-hybrid
Fragaria vesca
gene32389-v1.0-hybrid
N
0.742
evm.TU.supercontig_74.80
Carica papaya
evm.TU.supercontig_74.80
N
0.740
30190.m011131
Ricinus communis
30190.m011131
N
0.740
MDP0000915100
Malus domestica
MDP0000915100
N
0.737
SapurV1A.0507s0230
Salix purpurea
SapurV1A.0507s0230
N
0.737
orange1.1g005954m.g
Citrus sinensis
orange1.1g005954m.g
N
0.732
Ciclev10019186m.g
Citrus clementina
Ciclev10019186m.g
N
0.732
Gorai.003G162400
Gossypium raimondii
Gorai.003G162400
N
0.732
PGSC0003DMG400003047
Solanum tuberosum
PGSC0003DMG400003047
N
0.721
Solyc08g080400.1
Solanum lycopersicum
Solyc08g080400.1
N
0.721
Eucgr.D01917
Eucalyptus grandis
Eucgr.D01917
N
0.721
Lus10029592.g
Linum usitatissimum
Lus10029592.g
N
0.715
Lus10006322.g
Linum usitatissimum
Lus10006322.g
N
0.712
PK26305.1
Cannabis sativa
PK26305.1
N
0.710
Ca_08738
Cicer arietinum
Ca_08738
N
0.707