CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla007135
(
Citrullus lanatus
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Cla007135
T201916_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla007135
GRAS
60
448
ASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGVPFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLGCDQEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWALWRPTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWK
Links
Other
GRAS
family TFs
Other
Citrullus lanatus
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cucsa.362140
Cucumis sativus
Cucsa.362140
N
0.951
SapurV1A.0865s0070
Salix purpurea
SapurV1A.0865s0070
N
0.812
VIT_00s0226g00070
Vitis vinifera
VIT_00s0226g00070
N
0.777
PK11022.1
Cannabis sativa
PK11022.1
N
0.773
Ciclev10020072m.g
Citrus clementina
Ciclev10020072m.g
N
0.770
Pm007259
Prunus mume
Pm007259
N
0.767
POPTR_0017s05450
Populus trichocarpa
POPTR_0017s05450
N
0.767
Gorai.011G140100
Gossypium raimondii
Gorai.011G140100
N
0.764
PRUPE_ppa1027119mg
Prunus persica
PRUPE_ppa1027119mg
N
0.762
SapurV1A.1357s0040
Salix purpurea
SapurV1A.1357s0040
N
0.762
POPTR_0007s01650
Populus trichocarpa
POPTR_0007s01650
N
0.761
Gorai.011G140300
Gossypium raimondii
Gorai.011G140300
N
0.761
TCM_019978
Theobroma cacao
TCM_019978
N
0.758
SapurV1A.0791s0060
Salix purpurea
SapurV1A.0791s0060
N
0.756
SapurV1A.1272s0060
Salix purpurea
SapurV1A.1272s0060
N
0.756
Ca_02696
Cicer arietinum
Ca_02696
N
0.753
SapurV1A.0485s0200
Salix purpurea
SapurV1A.0485s0200
N
0.746
cassava11920.valid.m1
Manihot esculenta
cassava11920.valid.m1
N
0.745
GLYMA13G42100
Glycine max
GLYMA13G42100
N
0.739
Eucgr.A00109
Eucalyptus grandis
Eucgr.A00109
N
0.737
GLYMA15G03290
Glycine max
GLYMA15G03290
N
0.729
chr3.CM0106.470.nd
Lotus japonicus
chr3.CM0106.470.nd
N
0.725
evm.TU.supercontig_9.323
Carica papaya
evm.TU.supercontig_9.323
N
0.723
MTR_2g099110
Medicago truncatula
MTR_2g099110
N
0.710
PGSC0003DMG400014615
Solanum tuberosum
PGSC0003DMG400014615
N
0.704
mgf025327m
Mimulus guttatus
mgf025327m
N
0.701