CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla019540
(
Citrullus lanatus
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Cla019540
T201939_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla019540
GRAS
139
510
LLHLLVACAEAVACRDRSHASILLSELRANALVFGSSFQRVASCFVQGLTDRLALVQPLGYVGFGLPIMSRVDHSSDRKKKDEALNLAYEIYPHIQFGHFVANSSILEVFEGENSVHVLDLGMAFGLPYGHQWRSLIESLAESPNRRLLRVTGIGLSVNRYRVMGEKLKSYAEGVGVQVEVLAVEGNLENLRPQDIKLHDGEALVITSIFQMHCVVKESRGALTSVLRMIYDLSPKALVLVEQDSNHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKIEQFYFAEEIKNIVSCEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVLGWKSKPIVATSCWK
Links
Other
GRAS
family TFs
Other
Citrullus lanatus
TFs
17 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cucsa.196250
Cucumis sativus
Cucsa.196250
N
0.981
gene22702-v1.0-hybrid
Fragaria vesca
gene22702-v1.0-hybrid
N
0.763
PRUPE_ppa016418mg
Prunus persica
PRUPE_ppa016418mg
N
0.758
TCM_014574
Theobroma cacao
TCM_014574
N
0.752
cassava33470.m1
Manihot esculenta
cassava33470.m1
N
0.744
VIT_17s0000g10300
Vitis vinifera
VIT_17s0000g10300
N
0.744
Pm024459
Prunus mume
Pm024459
N
0.741
POPTR_0012s09550
Populus trichocarpa
POPTR_0012s09550
N
0.738
30147.m013794
Ricinus communis
30147.m013794
N
0.736
POPTR_0015s10310
Populus trichocarpa
POPTR_0015s10310
N
0.733
Gorai.006G270800
Gossypium raimondii
Gorai.006G270800
N
0.722
orange1.1g040125m.g
Citrus sinensis
orange1.1g040125m.g
N
0.722
Ciclev10019777m.g
Citrus clementina
Ciclev10019777m.g
N
0.722
mgf020930m
Mimulus guttatus
mgf020930m
N
0.708
Ca_08777
Cicer arietinum
Ca_08777
N
0.708
Eucgr.H04688
Eucalyptus grandis
Eucgr.H04688
N
0.705
orange1.1g037028m.g
Citrus sinensis
orange1.1g037028m.g
N
0.702