CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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28677.m000055
(
Ricinus communis
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
28677.m000055
T202001_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
28677.m000055
GRAS
200
562
LVHTLLACAEAIQQDNFKLAEALLKHIGLLAASQASSMRKVATYFAEALARRIYKIYPQESLDPSYSDTLEMHFYETCPYLKFAHFTANQAILEAFGTANRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQSNNTDALQQVGWKLAQLADTIGVEFEFRGFVANSLADLQPEMLDLRPPDVETVAVNSVFELHRLLARPGGMEKVLSSIKAMKPKIVTVVEQEASHNGPVFLDRFTEALHYYSSLFDSLEGSGLNVPSQDLVMSELYLGRQICNVVACEGAHRVERHESLPHWRTRFESAGFDRVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQ
Links
Other
GRAS
family TFs
Other
Ricinus communis
TFs
92 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava6237.valid.m1
Manihot esculenta
cassava6237.valid.m1
I
0.933
POPTR_0005s14540
Populus trichocarpa
POPTR_0005s14540
I
0.884
POPTR_0004s08890
Populus trichocarpa
POPTR_0004s08890
I
0.883
Pm014329
Prunus mume
Pm014329
I
0.874
MDP0000669451
Malus domestica
MDP0000669451
I
0.872
Lus10009133.g
Linum usitatissimum
Lus10009133.g
N
0.869
VIT_14s0006g00640
Vitis vinifera
VIT_14s0006g00640
I
0.867
Ciclev10011367m.g
Citrus clementina
Ciclev10011367m.g
N
0.867
PRUPE_ppa003206mg
Prunus persica
PRUPE_ppa003206mg
I
0.866
TCM_019165
Theobroma cacao
TCM_019165
N
0.866
orange1.1g008153m.g
Citrus sinensis
orange1.1g008153m.g
N
0.864
evm.TU.supercontig_116.43
Carica papaya
evm.TU.supercontig_116.43
I
0.853
Lus10033583.g
Linum usitatissimum
Lus10033583.g
N
0.846
Eucgr.J01594
Eucalyptus grandis
Eucgr.J01594
I
0.842
Lus10017626.g
Linum usitatissimum
Lus10017626.g
N
0.839
Gorai.001G089400
Gossypium raimondii
Gorai.001G089400
I
0.833
SapurV1A.0102s0220
Salix purpurea
SapurV1A.0102s0220
N
0.833
GLYMA18G04500
Glycine max
GLYMA18G04500
I
0.819
GLYMA11G33720
Glycine max
GLYMA11G33720
I
0.808
evm.TU.supercontig_2.240
Carica papaya
evm.TU.supercontig_2.240
I
0.804
Solyc11g011260.1
Solanum lycopersicum
Solyc11g011260.1
N
0.803
PGSC0003DMG400015692
Solanum tuberosum
PGSC0003DMG400015692
N
0.803
POPTR_0008s13090
Populus trichocarpa
POPTR_0008s13090
N
0.801
Cla020062
Citrullus lanatus
Cla020062
N
0.797
SapurV1A.0405s0090
Salix purpurea
SapurV1A.0405s0090
N
0.796
SapurV1A.0015s0210
Salix purpurea
SapurV1A.0015s0210
N
0.795
TCM_010965
Theobroma cacao
TCM_010965
N
0.793
29692.m000540
Ricinus communis
29692.m000540
N
0.793
POPTR_0010s12080
Populus trichocarpa
POPTR_0010s12080
N
0.792
MTR_3g065980
Medicago truncatula
MTR_3g065980
N
0.791
cassava15077.m1
Manihot esculenta
cassava15077.m1
N
0.790
GAI1
Vitis vinifera
VIT_01s0011g05260
N
0.789
LjT15P09.140.nc
Lotus japonicus
LjT15P09.140.nc
N
0.783
LjT40K11.90.nc
Lotus japonicus
LjT40K11.90.nc
N
0.783
PK14700.1
Cannabis sativa
PK14700.1
N
0.782
cassava14484.m1
Manihot esculenta
cassava14484.m1
N
0.778
Cucsa.006260
Cucumis sativus
Cucsa.006260
N
0.778
Ca_13295
Cicer arietinum
Ca_13295
I
0.778
Gorai.002G177000
Gossypium raimondii
Gorai.002G177000
N
0.775
Pm006304
Prunus mume
Pm006304
N
0.770
PRUPE_ppa005944mg
Prunus persica
PRUPE_ppa005944mg
N
0.765
Cla003996
Citrullus lanatus
Cla003996
N
0.762
AMTR_s00010p00148880
Amborella trichopoda
AMTR_s00010p00148880
N
0.760
Cucsa.280310
Cucumis sativus
Cucsa.280310
N
0.759
mgf008289m
Mimulus guttatus
mgf008289m
N
0.758
Thhalv10005482m.g
Eutrema salsugineum
Thhalv10005482m.g
N
0.757
Cagra.2235s0013
Capsella grandiflora
Cagra.2235s0013
N
0.751
Bostr.7903s0021
Boechera stricta
Bostr.7903s0021
N
0.751
Ca_05046
Cicer arietinum
Ca_05046
N
0.750
RGA
Arabidopsis thaliana
AT2G01570
N
0.746
RGA1
Arabidopsis lyrata
fgenesh2_kg.5__65__AT2G01570.1
N
0.746
Aquca_091_00032
Aquilegia coerulea
Aquca_091_00032
N
0.745
GLYMA05G27190
Glycine max
GLYMA05G27190
N
0.744
MDP0000237978
Malus domestica
MDP0000237978
N
0.744
GLYMA08G10140
Glycine max
GLYMA08G10140
N
0.744
Bo7g078550
Brassica oleracea
Bo7g078550
N
0.743
Eucgr.G02163
Eucalyptus grandis
Eucgr.G02163
N
0.743
Bra024875
Brassica rapa
Bra024875
N
0.743
Thhalv10007323m.g
Eutrema salsugineum
Thhalv10007323m.g
N
0.742
Carubv10008833m.g
Capsella rubella
Carubv10008833m.g
N
0.737
Bostr.7128s0107
Boechera stricta
Bostr.7128s0107
N
0.734
orange1.1g043131m.g
Citrus sinensis
orange1.1g043131m.g
N
0.733
Ciclev10017466m.g
Citrus clementina
Ciclev10017466m.g
N
0.733
Cagra.3501s0003
Capsella grandiflora
Cagra.3501s0003
N
0.731
F775_03572
Aegilops tauschii
F775_03572
N
0.731
Carubv10018534m.g
Capsella rubella
Carubv10018534m.g
N
0.730
GAI
Arabidopsis lyrata
fgenesh2_kg.1__1634__AT1G14920.1
N
0.728
GAI
Arabidopsis thaliana
AT1G14920
N
0.728
Aquca_002_01300
Aquilegia coerulea
Aquca_002_01300
N
0.725
RGL2
Arabidopsis lyrata
fgenesh2_kg.3__292__AT3G03450.1
I
0.722
Thhalv10018436m.g
Eutrema salsugineum
Thhalv10018436m.g
N
0.721
Traes_4AL_77F4CC833
Triticum aestivum
Traes_4AL_77F4CC833
N
0.714
RGL1
Arabidopsis lyrata
fgenesh2_kg.2__868__AT1G66350.1
N
0.713
Carubv10020171m.g
Capsella rubella
Carubv10020171m.g
N
0.709
SapurV1A.0230s0190
Salix purpurea
SapurV1A.0230s0190
N
0.709
Pavir.Ib04357
Panicum virgatum
Pavir.Ib04357
N
0.708
Pavir.Ia00840
Panicum virgatum
Pavir.Ia00840
N
0.708
mgf025772m
Mimulus guttatus
mgf025772m
N
0.708
SLR1
Oryza sativa
OS03G0707600
N
0.706
AMTR_s00012p00140480
Amborella trichopoda
AMTR_s00012p00140480
N
0.704
ONIVA03G32670
Oryza nivara
ONIVA03G32670
N
0.702
OPUNC03G28530
Oryza punctata
OPUNC03G28530
N
0.702
ORGLA03G0290200
Oryza glaberrima
ORGLA03G0290200
N
0.702
OMERI03G27970
Oryza meridionalis
OMERI03G27970
N
0.702
LPERR03G26000
Leersia perrieri
LPERR03G26000
N
0.702
ORUFI03G32650
Oryza rufipogon
ORUFI03G32650
N
0.702
OGLUM03G31610
Oryza glumaepatula
OGLUM03G31610
N
0.702
OBART03G31370
Oryza barthii
OBART03G31370
N
0.702
SLR1
Oryza indica
BGIOSGA013420
N
0.702
Bo2g052880
Brassica oleracea
Bo2g052880
N
0.700
GRMZM2G144744
Zea mays
GRMZM2G144744
N
0.700
Traes_4BS_2EE4988CD
Triticum aestivum
Traes_4BS_2EE4988CD
N
0.700