CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava6237.valid.m1
(
Manihot esculenta
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
cassava6237.valid.m1
T202108_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RGL2
M02031_2.00
Arabidopsis thaliana
NGTACGGHN
NDCCGTACN
PBM
Weirauch et al.(2014)
pTH8681
0.700
0.700
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava6237.valid.m1
GRAS
249
611
LVHTLLACAEAVQRENLKLAEALVKHIGLLAASQASSMRKVATYFAEALARRIYKIYPQECLDPSYSDTLEMHFYETCPYLKFAHFTANQAILEAFATASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPNNTDTLQQVGWKLAQLAETIGVEFEFRGFVANSLADLQPEMLDLRPPEVETVAVNSVFELHRLLARPGGIDKVLSSIKAMKPKIVTIVEQEANHNGSVFVDRFTEALHYYSSLFDSLEGSGLAVPSQDLVMSELYLGRQICNVVACEGADRVERHETLSHWRTRIESAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWK
Links
Other
GRAS
family TFs
Other
Manihot esculenta
TFs
104 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy