Cagra.0860s0005 (Capsella grandiflora)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Cagra.0860s0005 T202314_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0860s0005.1.p GRAS 54 479
Cagra.0860s0005.2.p GRAS 54 479

Links

Other GRAS family TFs
Other Capsella grandiflora TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10008999m.g Capsella rubella Carubv10008999m.g N 0.997
SCL3 Arabidopsis thaliana AT1G50420 N 0.984
Bostr.26675s0133 Boechera stricta Bostr.26675s0133 N 0.981
SCL3 Arabidopsis lyrata fgenesh2_kg.1__4122__AT1G50420.1 N 0.976
Bra014251 Brassica rapa Bra014251 N 0.954
Thhalv10011447m.g Eutrema salsugineum Thhalv10011447m.g N 0.949
Bo3g179450 Brassica oleracea Bo3g179450 N 0.946
Bo5g078760 Brassica oleracea Bo5g078760 N 0.940
Bra018848 Brassica rapa Bra018848 N 0.916
Bo6g022200 Brassica oleracea Bo6g022200 N 0.911
Gorai.006G125700 Gossypium raimondii Gorai.006G125700 N 0.792
evm.TU.supercontig_84.12 Carica papaya evm.TU.supercontig_84.12 N 0.786
SCL3 Populus trichocarpa POPTR_0009s05330 N 0.781
TCM_040833 Theobroma cacao TCM_040833 N 0.781
Ciclev10015219m.g Citrus clementina Ciclev10015219m.g N 0.771
orange1.1g014413m.g Citrus sinensis orange1.1g014413m.g N 0.769
SapurV1A.0415s0050 Salix purpurea SapurV1A.0415s0050 N 0.764
cassava31043.valid.m1 Manihot esculenta cassava31043.valid.m1 N 0.760
Pm012190 Prunus mume Pm012190 N 0.760
SCL3 Vitis vinifera VIT_06s0009g02390 N 0.759
PRUPE_ppa005243mg Prunus persica PRUPE_ppa005243mg N 0.757
chr3.CM0460.90.nd Lotus japonicus chr3.CM0460.90.nd N 0.756
chr1.CM0794.360.nd Lotus japonicus chr1.CM0794.360.nd N 0.755
PGSC0003DMG400004649 Solanum tuberosum PGSC0003DMG400004649 N 0.751
30024.m001746 Ricinus communis 30024.m001746 N 0.751
Cla006433 Citrullus lanatus Cla006433 N 0.749
Ca_11133 Cicer arietinum Ca_11133 N 0.749
Solyc12g099900.1 Solanum lycopersicum Solyc12g099900.1 N 0.748
cassava13860.valid.m1 Manihot esculenta cassava13860.valid.m1 N 0.745
Ca_27441 Cicer arietinum Ca_27441 N 0.740
MTR_5g009080 Medicago truncatula MTR_5g009080 N 0.734
Gorai.013G252600 Gossypium raimondii Gorai.013G252600 N 0.734
Cucsa.055340 Cucumis sativus Cucsa.055340 N 0.733
chr2.CM0018.90.nc Lotus japonicus chr2.CM0018.90.nc N 0.732
POPTR_0001s06090 Populus trichocarpa POPTR_0001s06090 N 0.730
cassava1375.valid.m1 Manihot esculenta cassava1375.valid.m1 N 0.727
30131.m007244 Ricinus communis 30131.m007244 N 0.727
cassava1376.valid.m1 Manihot esculenta cassava1376.valid.m1 N 0.727
TCM_042392 Theobroma cacao TCM_042392 N 0.719
SapurV1A.1723s0080 Salix purpurea SapurV1A.1723s0080 N 0.718
orange1.1g011736m.g Citrus sinensis orange1.1g011736m.g N 0.718
SapurV1A.0504s0280 Salix purpurea SapurV1A.0504s0280 N 0.716
Solyc01g008910.2 Solanum lycopersicum Solyc01g008910.2 N 0.714
PDK_20s1303935g001 Phoenix dactylifera PDK_20s1303935g001 N 0.714
GLYMA11G10170 Glycine max GLYMA11G10170 N 0.713
PGSC0003DMG400022709 Solanum tuberosum PGSC0003DMG400022709 N 0.713
GLYMA12G02490 Glycine max GLYMA12G02490 N 0.711
SapurV1A.0009s0760 Salix purpurea SapurV1A.0009s0760 N 0.711
Lus10009717.g Linum usitatissimum Lus10009717.g N 0.711
VIT_13s0019g01220 Vitis vinifera VIT_13s0019g01220 N 0.711
Gorai.013G015100 Gossypium raimondii Gorai.013G015100 N 0.711
cassava20989.m1 Manihot esculenta cassava20989.m1 N 0.710
Aquca_014_00674 Aquilegia coerulea Aquca_014_00674 N 0.710
Lus10022418.g Linum usitatissimum Lus10022418.g N 0.709
Ciclev10031389m.g Citrus clementina Ciclev10031389m.g N 0.707
Gorai.012G080500 Gossypium raimondii Gorai.012G080500 N 0.707
POPTR_0003s20100 Populus trichocarpa POPTR_0003s20100 N 0.705
MTR_4g076140 Medicago truncatula MTR_4g076140 N 0.704