CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10008391m.g
(
Capsella rubella
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Carubv10008391m.g
T202346_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10008390m
GRAS
378
749
LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTSAADMLKAYQTYMLVCPFKKAAIIFANHSMMRFTENANTIHIIDFGISYGFQWPALIHRLSLRPGGSPKLRITGIELPQRGFRPAEGVQETGHRLARYCQRHNVPFEYNAIAQKWETIKVEDLKLRQGEYVVVNSLFRFKNLLDETVLVNSPRDAVLKLIRKVNPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLARENEMRLMFEKEFYGREIINVVACEGTERVERPETYKQWQARLVRAGFRQLPLDKELMQNLKLKIDNGYDKNFDVDQNSNWLLQGWKGRIVYASSVWV
Carubv10008391m
GRAS
378
749
LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTSAADMLKAYQTYMLVCPFKKAAIIFANHSMMRFTENANTIHIIDFGISYGFQWPALIHRLSLRPGGSPKLRITGIELPQRGFRPAEGVQETGHRLARYCQRHNVPFEYNAIAQKWETIKVEDLKLRQGEYVVVNSLFRFKNLLDETVLVNSPRDAVLKLIRKVNPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLARENEMRLMFEKEFYGREIINVVACEGTERVERPETYKQWQARLVRAGFRQLPLDKELMQNLKLKIDNGYDKNFDVDQNSNWLLQGWKGRIVYASSVWV
Links
Other
GRAS
family TFs
Other
Capsella rubella
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AFUA_1G07560
Aspergillus fumigatus
CADAFUAG00008721
N
0.000
e_gw1.14.415.1
Mycosphaerella fijiensis
e_gw1.14.415.1
N
0.000
TRIVIDRAFT_9220
Trichoderma virens
TRIVIDRAFT_9220
N
0.000
SMAC_02413
Sordaria macrospora
SMAC_02413
N
0.000
SBOR_0998
Sclerotinia borealis
SBOR_0998
N
0.000
PFICI_15016
Pestalotiopsis fici
PFICI_15016
N
0.000
FVEG_00767
Fusarium verticillioides
FVEG_00767
N
0.000
FOXG_00749
Fusarium oxysporum
FOXG_00749
N
0.000
NFIA_017180
Neosartorya fischeri
CADNFIAG00001345
N
0.000
ATEG_10208
Aspergillus terreus
CADATEAG00000945
N
0.000
CADAORAG00006518
Aspergillus oryzae
CADAORAG00006518
N
0.000
ANIA_05118
Aspergillus nidulans
CADANIAG00003102
N
0.000
e_gw1.00009.433.1
Aspergillus carbonarius
e_gw1.00009.433.1
N
0.000