Carubv10008833m.g (Capsella rubella)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Carubv10008833m.g T202349_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10008833m GRAS 164 524

Links

Other GRAS family TFs
Other Capsella rubella TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N 0.994
GAI Arabidopsis thaliana AT1G14920 N 0.975
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N 0.966
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N 0.966
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N 0.952
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N 0.883
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N 0.880
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N 0.874
Bo7g078550 Brassica oleracea Bo7g078550 N 0.871
RGA Arabidopsis thaliana AT2G01570 N 0.866
Bra024875 Brassica rapa Bra024875 N 0.866
RGA1 Arabidopsis lyrata fgenesh2_kg.5__65__AT2G01570.1 N 0.857
Carubv10018534m.g Capsella rubella Carubv10018534m.g N 0.849
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.843
29692.m000540 Ricinus communis 29692.m000540 N 0.835
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.832
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.826
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.824
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.824
Cucsa.280310 Cucumis sativus Cucsa.280310 N 0.824
PK14700.1 Cannabis sativa PK14700.1 N 0.824
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N 0.821
TCM_010965 Theobroma cacao TCM_010965 N 0.818
Cla003996 Citrullus lanatus Cla003996 N 0.818
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.818
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I 0.815
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.810
Ca_05046 Cicer arietinum Ca_05046 N 0.807
GLYMA05G27190 Glycine max GLYMA05G27190 N 0.807
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N 0.804
GLYMA08G10140 Glycine max GLYMA08G10140 N 0.801
Pm006304 Prunus mume Pm006304 N 0.798
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N 0.793
MDP0000237978 Malus domestica MDP0000237978 N 0.790
Bo9g070200 Brassica oleracea Bo9g070200 N 0.783
mgf008289m Mimulus guttatus mgf008289m N 0.779
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N 0.765
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N 0.760
Pm014329 Prunus mume Pm014329 I 0.759
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.759
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.759
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.759
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.757
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.756
Bra017443 Brassica rapa Bra017443 N 0.756
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.751
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.751
MDP0000669451 Malus domestica MDP0000669451 I 0.748
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.744
Cla020062 Citrullus lanatus Cla020062 N 0.742
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.742
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.740
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.740
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N 0.740
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.739
28677.m000055 Ricinus communis 28677.m000055 N 0.737
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.734
Cucsa.006260 Cucumis sativus Cucsa.006260 N 0.731
F775_03572 Aegilops tauschii F775_03572 N 0.731
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.728
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.727
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.727
TCM_019165 Theobroma cacao TCM_019165 N 0.725
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.725
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.723
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.720
mgf025772m Mimulus guttatus mgf025772m N 0.720
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.718
Ca_13295 Cicer arietinum Ca_13295 I 0.717
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.716
Si039400m.g Setaria italica Si039400m.g N 0.714
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N 0.714
Pavir.Ia00840 Panicum virgatum Pavir.Ia00840 N 0.714
OB03G38380 Oryza brachyantha OB03G38380 N 0.706
SLR1 Oryza sativa OS03G0707600 N 0.706
LPERR03G26000 Leersia perrieri LPERR03G26000 N 0.703
MLOC_67940 Hordeum vulgare MLOC_67940 N 0.700
Sb01g010660 Sorghum bicolor Sb01g010660 N 0.700
BRADI1G11090 Brachypodium distachyon BRADI1G11090 N 0.700