Carubv10008999m.g (Capsella rubella)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Carubv10008999m.g T202350_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10008997m GRAS 54 479
Carubv10008999m GRAS 54 479

Links

Other GRAS family TFs
Other Capsella rubella TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0860s0005 Capsella grandiflora Cagra.0860s0005 N 0.997
SCL3 Arabidopsis thaliana AT1G50420 N 0.981
Bostr.26675s0133 Boechera stricta Bostr.26675s0133 N 0.978
SCL3 Arabidopsis lyrata fgenesh2_kg.1__4122__AT1G50420.1 N 0.973
Bra014251 Brassica rapa Bra014251 N 0.951
Thhalv10011447m.g Eutrema salsugineum Thhalv10011447m.g N 0.946
Bo3g179450 Brassica oleracea Bo3g179450 N 0.943
Bo5g078760 Brassica oleracea Bo5g078760 N 0.935
Bra018848 Brassica rapa Bra018848 N 0.913
Bo6g022200 Brassica oleracea Bo6g022200 N 0.908
Gorai.006G125700 Gossypium raimondii Gorai.006G125700 N 0.789
evm.TU.supercontig_84.12 Carica papaya evm.TU.supercontig_84.12 N 0.783
TCM_040833 Theobroma cacao TCM_040833 N 0.779
SCL3 Populus trichocarpa POPTR_0009s05330 N 0.778
Ciclev10015219m.g Citrus clementina Ciclev10015219m.g N 0.769
orange1.1g014413m.g Citrus sinensis orange1.1g014413m.g N 0.766
SapurV1A.0415s0050 Salix purpurea SapurV1A.0415s0050 N 0.762
cassava31043.valid.m1 Manihot esculenta cassava31043.valid.m1 N 0.757
Pm012190 Prunus mume Pm012190 N 0.757
SCL3 Vitis vinifera VIT_06s0009g02390 N 0.756
PRUPE_ppa005243mg Prunus persica PRUPE_ppa005243mg N 0.755
chr1.CM0794.360.nd Lotus japonicus chr1.CM0794.360.nd N 0.755
chr3.CM0460.90.nd Lotus japonicus chr3.CM0460.90.nd N 0.753
Ca_11133 Cicer arietinum Ca_11133 N 0.749
PGSC0003DMG400004649 Solanum tuberosum PGSC0003DMG400004649 N 0.748
30024.m001746 Ricinus communis 30024.m001746 N 0.748
Cla006433 Citrullus lanatus Cla006433 N 0.747
Solyc12g099900.1 Solanum lycopersicum Solyc12g099900.1 N 0.745
cassava13860.valid.m1 Manihot esculenta cassava13860.valid.m1 N 0.742
Ca_27441 Cicer arietinum Ca_27441 N 0.737
MTR_5g009080 Medicago truncatula MTR_5g009080 N 0.732
Gorai.013G252600 Gossypium raimondii Gorai.013G252600 N 0.731
Cucsa.055340 Cucumis sativus Cucsa.055340 N 0.730
chr2.CM0018.90.nc Lotus japonicus chr2.CM0018.90.nc N 0.729
POPTR_0001s06090 Populus trichocarpa POPTR_0001s06090 N 0.727
cassava1375.valid.m1 Manihot esculenta cassava1375.valid.m1 N 0.725
30131.m007244 Ricinus communis 30131.m007244 N 0.725
cassava1376.valid.m1 Manihot esculenta cassava1376.valid.m1 N 0.725
SapurV1A.1723s0080 Salix purpurea SapurV1A.1723s0080 N 0.718
TCM_042392 Theobroma cacao TCM_042392 N 0.717
orange1.1g011736m.g Citrus sinensis orange1.1g011736m.g N 0.715
SapurV1A.0504s0280 Salix purpurea SapurV1A.0504s0280 N 0.714
Gorai.013G015100 Gossypium raimondii Gorai.013G015100 N 0.714
PDK_20s1303935g001 Phoenix dactylifera PDK_20s1303935g001 N 0.714
Solyc01g008910.2 Solanum lycopersicum Solyc01g008910.2 N 0.711
PGSC0003DMG400022709 Solanum tuberosum PGSC0003DMG400022709 N 0.710
GLYMA11G10170 Glycine max GLYMA11G10170 N 0.710
cassava20989.m1 Manihot esculenta cassava20989.m1 N 0.708
Lus10009717.g Linum usitatissimum Lus10009717.g N 0.708
SapurV1A.0009s0760 Salix purpurea SapurV1A.0009s0760 N 0.708
GLYMA12G02490 Glycine max GLYMA12G02490 N 0.708
VIT_13s0019g01220 Vitis vinifera VIT_13s0019g01220 N 0.708
Lus10022418.g Linum usitatissimum Lus10022418.g N 0.707
Aquca_014_00674 Aquilegia coerulea Aquca_014_00674 N 0.707
Ciclev10031389m.g Citrus clementina Ciclev10031389m.g N 0.705
Gorai.012G080500 Gossypium raimondii Gorai.012G080500 N 0.705
POPTR_0003s20100 Populus trichocarpa POPTR_0003s20100 N 0.702
MTR_4g076140 Medicago truncatula MTR_4g076140 N 0.701