CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10011367m.g
(
Citrus clementina
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Ciclev10011367m.g
T202389_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10011367m
GRAS
206
568
LVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVVDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACEGTDRNERHETLTQWRTRLGSAGFDPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQ
Links
Other
GRAS
family TFs
Other
Citrus clementina
TFs
98 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g008153m.g
Citrus sinensis
orange1.1g008153m.g
N
0.992
Pm014329
Prunus mume
Pm014329
I
0.886
POPTR_0005s14540
Populus trichocarpa
POPTR_0005s14540
I
0.884
MDP0000669451
Malus domestica
MDP0000669451
I
0.883
PRUPE_ppa003206mg
Prunus persica
PRUPE_ppa003206mg
I
0.883
POPTR_0004s08890
Populus trichocarpa
POPTR_0004s08890
I
0.881
cassava6237.valid.m1
Manihot esculenta
cassava6237.valid.m1
I
0.872
VIT_14s0006g00640
Vitis vinifera
VIT_14s0006g00640
I
0.869
28677.m000055
Ricinus communis
28677.m000055
N
0.867
Eucgr.J01594
Eucalyptus grandis
Eucgr.J01594
I
0.864
evm.TU.supercontig_116.43
Carica papaya
evm.TU.supercontig_116.43
I
0.856
Gorai.001G089400
Gossypium raimondii
Gorai.001G089400
I
0.842
TCM_019165
Theobroma cacao
TCM_019165
N
0.836
Lus10033583.g
Linum usitatissimum
Lus10033583.g
N
0.830
Lus10017626.g
Linum usitatissimum
Lus10017626.g
N
0.828
SapurV1A.0102s0220
Salix purpurea
SapurV1A.0102s0220
N
0.828
LjT40K11.90.nc
Lotus japonicus
LjT40K11.90.nc
N
0.825
LjT15P09.140.nc
Lotus japonicus
LjT15P09.140.nc
N
0.825
Solyc11g011260.1
Solanum lycopersicum
Solyc11g011260.1
N
0.825
PGSC0003DMG400015692
Solanum tuberosum
PGSC0003DMG400015692
N
0.825
GLYMA18G04500
Glycine max
GLYMA18G04500
I
0.819
GLYMA11G33720
Glycine max
GLYMA11G33720
I
0.817
cassava15077.m1
Manihot esculenta
cassava15077.m1
N
0.811
Cla020062
Citrullus lanatus
Cla020062
N
0.808
GAI1
Vitis vinifera
VIT_01s0011g05260
N
0.806
MTR_3g065980
Medicago truncatula
MTR_3g065980
N
0.805
29692.m000540
Ricinus communis
29692.m000540
N
0.803
AMTR_s00010p00148880
Amborella trichopoda
AMTR_s00010p00148880
N
0.799
PK14700.1
Cannabis sativa
PK14700.1
N
0.796
cassava14484.m1
Manihot esculenta
cassava14484.m1
N
0.794
Ca_13295
Cicer arietinum
Ca_13295
I
0.794
POPTR_0008s13090
Populus trichocarpa
POPTR_0008s13090
N
0.792
Cucsa.006260
Cucumis sativus
Cucsa.006260
N
0.789
evm.TU.supercontig_2.240
Carica papaya
evm.TU.supercontig_2.240
I
0.789
POPTR_0010s12080
Populus trichocarpa
POPTR_0010s12080
N
0.786
Gorai.002G177000
Gossypium raimondii
Gorai.002G177000
N
0.786
TCM_010965
Theobroma cacao
TCM_010965
N
0.786
SapurV1A.0405s0090
Salix purpurea
SapurV1A.0405s0090
N
0.783
Cla003996
Citrullus lanatus
Cla003996
N
0.773
SapurV1A.0015s0210
Salix purpurea
SapurV1A.0015s0210
N
0.772
Pm006304
Prunus mume
Pm006304
N
0.770
mgf008289m
Mimulus guttatus
mgf008289m
N
0.764
Cucsa.280310
Cucumis sativus
Cucsa.280310
N
0.764
Thhalv10005482m.g
Eutrema salsugineum
Thhalv10005482m.g
N
0.763
Cagra.2235s0013
Capsella grandiflora
Cagra.2235s0013
N
0.758
Eucgr.G02163
Eucalyptus grandis
Eucgr.G02163
N
0.758
Bostr.7903s0021
Boechera stricta
Bostr.7903s0021
N
0.758
Aquca_091_00032
Aquilegia coerulea
Aquca_091_00032
N
0.758
PRUPE_ppa005944mg
Prunus persica
PRUPE_ppa005944mg
N
0.758
RGA
Arabidopsis thaliana
AT2G01570
N
0.757
Ca_05046
Cicer arietinum
Ca_05046
N
0.756
RGA1
Arabidopsis lyrata
fgenesh2_kg.5__65__AT2G01570.1
N
0.753
Bra024875
Brassica rapa
Bra024875
N
0.750
Bo7g078550
Brassica oleracea
Bo7g078550
N
0.750
GLYMA05G27190
Glycine max
GLYMA05G27190
N
0.744
Traes_4AL_77F4CC833
Triticum aestivum
Traes_4AL_77F4CC833
N
0.740
MDP0000237978
Malus domestica
MDP0000237978
N
0.739
Cagra.3501s0003
Capsella grandiflora
Cagra.3501s0003
N
0.739
Carubv10008833m.g
Capsella rubella
Carubv10008833m.g
N
0.739
GLYMA08G10140
Glycine max
GLYMA08G10140
N
0.739
Si039400m.g
Setaria italica
Si039400m.g
N
0.739
Ciclev10017466m.g
Citrus clementina
Ciclev10017466m.g
N
0.738
orange1.1g043131m.g
Citrus sinensis
orange1.1g043131m.g
N
0.736
Pavir.Ia00840
Panicum virgatum
Pavir.Ia00840
N
0.733
GAI
Arabidopsis thaliana
AT1G14920
N
0.733
Aquca_002_01300
Aquilegia coerulea
Aquca_002_01300
N
0.733
Pavir.Ib04357
Panicum virgatum
Pavir.Ib04357
N
0.733
GAI
Arabidopsis lyrata
fgenesh2_kg.1__1634__AT1G14920.1
N
0.733
Thhalv10007323m.g
Eutrema salsugineum
Thhalv10007323m.g
N
0.733
LPERR03G26000
Leersia perrieri
LPERR03G26000
N
0.731
MLOC_67940
Hordeum vulgare
MLOC_67940
N
0.731
OB03G38380
Oryza brachyantha
OB03G38380
N
0.731
ORGLA03G0290200
Oryza glaberrima
ORGLA03G0290200
N
0.731
SLR1
Oryza indica
BGIOSGA013420
N
0.731
SLR1
Oryza sativa
OS03G0707600
N
0.731
ONIVA03G32670
Oryza nivara
ONIVA03G32670
N
0.731
Bostr.7128s0107
Boechera stricta
Bostr.7128s0107
N
0.731
OBART03G31370
Oryza barthii
OBART03G31370
N
0.731
OMERI03G27970
Oryza meridionalis
OMERI03G27970
N
0.731
Carubv10020171m.g
Capsella rubella
Carubv10020171m.g
N
0.729
GRMZM2G144744
Zea mays
GRMZM2G144744
N
0.728
GRMZM2G024973
Zea mays
GRMZM2G024973
N
0.728
Traes_4DS_ADBA6E30A
Triticum aestivum
Traes_4DS_ADBA6E30A
N
0.728
RGL2
Arabidopsis lyrata
fgenesh2_kg.3__292__AT3G03450.1
I
0.728
BRADI1G11090
Brachypodium distachyon
BRADI1G11090
N
0.728
OGLUM03G31610
Oryza glumaepatula
OGLUM03G31610
N
0.727
OPUNC03G28530
Oryza punctata
OPUNC03G28530
N
0.727
Traes_4BS_2EE4988CD
Triticum aestivum
Traes_4BS_2EE4988CD
N
0.725
Carubv10018534m.g
Capsella rubella
Carubv10018534m.g
N
0.725
ORUFI03G32650
Oryza rufipogon
ORUFI03G32650
N
0.724
Sb01g010660
Sorghum bicolor
Sb01g010660
N
0.722
RGL1
Arabidopsis lyrata
fgenesh2_kg.2__868__AT1G66350.1
N
0.719
Cagra.0463s0002
Capsella grandiflora
Cagra.0463s0002
N
0.714
SapurV1A.0230s0190
Salix purpurea
SapurV1A.0230s0190
N
0.706
RGL1
Arabidopsis thaliana
AT1G66350
N
0.703
mgf025772m
Mimulus guttatus
mgf025772m
N
0.703
Thhalv10018436m.g
Eutrema salsugineum
Thhalv10018436m.g
N
0.703
Bostr.26959s0284
Boechera stricta
Bostr.26959s0284
N
0.700