CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10015222m.g
(
Citrus clementina
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Ciclev10015222m.g
T202395_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10015222m
GRAS
43
443
IEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSSFLRALISRASKVCPTTLSNFNGSSTNHRRLMSVTELAGYVDLIPWHRFGFCASNSAILKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGSPSLRITVPYSRPPVPPLLNVSTEEVGLRLGNFAKFRDVPFEFKVIDDSSSAGDIVMSKLESSSSFHFESLLSHLSTPSILNLREDEALVINCQNWLRYLYDDEGRGINAQDASLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATCFNYLWIPFDALETFLPKESRQRLDYEADVGHKIENIISFEGFQRIERSESGSKLSQRMKNAGFFSLPFCEETVKEVRSLLDEHASGWGMKREEEMLALTWKGHNSVFATAWV
Links
Other
GRAS
family TFs
Other
Citrus clementina
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g041891m.g
Citrus sinensis
orange1.1g041891m.g
N
0.992
TCM_007806
Theobroma cacao
TCM_007806
N
0.810
cassava21819.m1
Manihot esculenta
cassava21819.m1
N
0.805
VIT_12s0059g02770
Vitis vinifera
VIT_12s0059g02770
N
0.791
Gorai.013G072100
Gossypium raimondii
Gorai.013G072100
N
0.786
POPTR_0017s06900
Populus trichocarpa
POPTR_0017s06900
N
0.780
PRUPE_ppa016112mg
Prunus persica
PRUPE_ppa016112mg
N
0.775
30156.m001710
Ricinus communis
30156.m001710
N
0.775
MDP0000863616
Malus domestica
MDP0000863616
N
0.774
Pm015255
Prunus mume
Pm015255
N
0.772
evm.TU.supercontig_8.255
Carica papaya
evm.TU.supercontig_8.255
N
0.766
SapurV1A.0312s0260
Salix purpurea
SapurV1A.0312s0260
N
0.764
SapurV1A.0187s0300
Salix purpurea
SapurV1A.0187s0300
N
0.762
POPTR_0007s02880
Populus trichocarpa
POPTR_0007s02880
N
0.757
Lus10018498.g
Linum usitatissimum
Lus10018498.g
N
0.753
GLYMA12G32350
Glycine max
GLYMA12G32350
N
0.751
GLYMA13G38080
Glycine max
GLYMA13G38080
N
0.750
MTR_2g089100
Medicago truncatula
MTR_2g089100
N
0.748
Ca_27895
Cicer arietinum
Ca_27895
N
0.748
Ca_14137
Cicer arietinum
Ca_14137
N
0.748
Lus10039709.g
Linum usitatissimum
Lus10039709.g
N
0.743
gene23882-v1.0-hybrid
Fragaria vesca
gene23882-v1.0-hybrid
N
0.743
Eucgr.K00873
Eucalyptus grandis
Eucgr.K00873
N
0.741
PGSC0003DMG400026191
Solanum tuberosum
PGSC0003DMG400026191
N
0.736
Solyc07g052960.1
Solanum lycopersicum
Solyc07g052960.1
N
0.732
Aquca_012_00254
Aquilegia coerulea
Aquca_012_00254
N
0.710