CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_1018.1
(
Carica papaya
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
evm.TU.supercontig_1018.1
T202506_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_1018.1
GRAS
415
775
LLTLLLQCAEAVSAENLEEANRMLLEISELSTPYGTSAQRVAAYFSEAMSARLVSSCLGIYAALPSISMPQTHAHKMVSAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAHKLGLPFEFCPVAEKVGNLDPDRLNISKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSHAGPFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEMKFHNWREKLQQCGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWR
Links
Other
GRAS
family TFs
Other
Carica papaya
TFs
81 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10011085m.g
Citrus clementina
Ciclev10011085m.g
N
0.942
orange1.1g014896m.g
Citrus sinensis
orange1.1g014896m.g
N
0.942
cassava25218.valid.m1
Manihot esculenta
cassava25218.valid.m1
N
0.933
30073.m002204
Ricinus communis
30073.m002204
N
0.928
POPTR_0016s15060
Populus trichocarpa
POPTR_0016s15060
N
0.928
PK22310.1
Cannabis sativa
PK22310.1
N
0.927
TCM_017746
Theobroma cacao
TCM_017746
N
0.925
cassava36326.valid.m1
Manihot esculenta
cassava36326.valid.m1
N
0.925
SapurV1A.0208s0090
Salix purpurea
SapurV1A.0208s0090
N
0.922
gene13644-v1.0-hybrid
Fragaria vesca
gene13644-v1.0-hybrid
N
0.922
PRUPE_ppa001546mg
Prunus persica
PRUPE_ppa001546mg
N
0.920
SCR
Vitis vinifera
VIT_08s0056g00050
N
0.919
GLYMA09G40620
Glycine max
GLYMA09G40620
N
0.919
Pm002956
Prunus mume
Pm002956
N
0.917
MDP0000397638
Malus domestica
MDP0000397638
N
0.914
Thhalv10010179m.g
Eutrema salsugineum
Thhalv10010179m.g
N
0.911
POPTR_0006s11500
Populus trichocarpa
POPTR_0006s11500
N
0.911
chr1.CM1255.400.nc
Lotus japonicus
chr1.CM1255.400.nc
N
0.911
Bo8g083500
Brassica oleracea
Bo8g083500
N
0.909
Eucgr.K01320
Eucalyptus grandis
Eucgr.K01320
N
0.908
MTR_7g074650
Medicago truncatula
MTR_7g074650
N
0.908
Bra007056
Brassica rapa
Bra007056
N
0.907
SCR
Arabidopsis thaliana
AT3G54220
N
0.906
Cagra.0562s0013
Capsella grandiflora
Cagra.0562s0013
N
0.906
SCR
Arabidopsis lyrata
fgenesh2_kg.5__1811__AT3G54220.1
N
0.906
Carubv10016802m.g
Capsella rubella
Carubv10016802m.g
N
0.906
GLYMA18G45220
Glycine max
GLYMA18G45220
N
0.906
LPERR11G01220
Leersia perrieri
LPERR11G01220
N
0.906
Bostr.0697s0034
Boechera stricta
Bostr.0697s0034
N
0.906
Gorai.006G236200
Gossypium raimondii
Gorai.006G236200
N
0.903
Cla012346
Citrullus lanatus
Cla012346
N
0.900
Ca_09530
Cicer arietinum
Ca_09530
N
0.900
Cucsa.002880
Cucumis sativus
Cucsa.002880
N
0.898
SapurV1A.1165s0100
Salix purpurea
SapurV1A.1165s0100
N
0.897
Gorai.005G001300
Gossypium raimondii
Gorai.005G001300
N
0.888
Solyc10g074680.1
Solanum lycopersicum
Solyc10g074680.1
N
0.886
mgf012242m
Mimulus guttatus
mgf012242m
N
0.885
PK17372.1
Cannabis sativa
PK17372.1
N
0.879
PGSC0003DMG400016833
Solanum tuberosum
PGSC0003DMG400016833
N
0.878
Aquca_004_00566
Aquilegia coerulea
Aquca_004_00566
N
0.869
GSMUA_Achr8G09400_001
Musa acuminata
GSMUA_Achr8G09400_001
N
0.838
GRMZM2G131516
Zea mays
GRMZM2G131516
N
0.826
AMTR_s00077p00190160
Amborella trichopoda
AMTR_s00077p00190160
N
0.821
OGLUM12G01020
Oryza glumaepatula
OGLUM12G01020
N
0.820
TRIUR3_28106
Triticum urartu
TRIUR3_28106
N
0.818
Pavir.J19041
Panicum virgatum
Pavir.J19041
N
0.817
OLONG_010321
Oryza longistaminata
OLONG_010321
N
0.815
OGLUM11G01180
Oryza glumaepatula
OGLUM11G01180
N
0.815
OBART12G01190
Oryza barthii
OBART12G01190
N
0.815
OPUNC11G01240
Oryza punctata
OPUNC11G01240
N
0.815
ONIVA11G01600
Oryza nivara
ONIVA11G01600
N
0.815
Sb05g001500
Sorghum bicolor
Sb05g001500
N
0.812
LPERR12G01340
Leersia perrieri
LPERR12G01340
N
0.811
SCR2
Oryza sativa
OS12G0122000
N
0.809
BGIOSGA034703
Oryza indica
BGIOSGA034703
N
0.809
BGIOSGA036912
Oryza indica
BGIOSGA036912
N
0.809
SCR1
Oryza sativa
OS11G0124300
N
0.809
ORUFI12G01460
Oryza rufipogon
ORUFI12G01460
N
0.809
Lus10016496.g
Linum usitatissimum
Lus10016496.g
N
0.809
BRADI4G44090
Brachypodium distachyon
BRADI4G44090
N
0.807
Traes_4DS_2CE9E3235
Triticum aestivum
Traes_4DS_2CE9E3235
N
0.806
Traes_4BS_A05D3DC53
Triticum aestivum
Traes_4BS_A05D3DC53
N
0.803
Traes_5DL_3EC609F62
Triticum aestivum
Traes_5DL_3EC609F62
N
0.800
Pavir.J21588
Panicum virgatum
Pavir.J21588
N
0.799
Lus10040734.g
Linum usitatissimum
Lus10040734.g
N
0.799
ORGLA12G0010300
Oryza glaberrima
ORGLA12G0010300
N
0.793
OBART11G01460
Oryza barthii
OBART11G01460
N
0.792
Traes_5BL_C02570726
Triticum aestivum
Traes_5BL_C02570726
N
0.792
ORGLA11G0013300
Oryza glaberrima
ORGLA11G0013300
N
0.791
LPERR11G01210
Leersia perrieri
LPERR11G01210
N
0.790
F775_14336
Aegilops tauschii
F775_14336
N
0.785
ORUFI11G01380
Oryza rufipogon
ORUFI11G01380
N
0.781
MLOC_64716
Hordeum vulgare
MLOC_64716
N
0.781
GRMZM2G015080
Zea mays
GRMZM2G015080
N
0.780
Pavir.J08573
Panicum virgatum
Pavir.J08573
N
0.770
Pavir.J23622
Panicum virgatum
Pavir.J23622
N
0.750
Pavir.Ha01915
Panicum virgatum
Pavir.Ha01915
N
0.744
Traes_2AS_455BD2CA1
Triticum aestivum
Traes_2AS_455BD2CA1
N
0.727
SELMODRAFT_432115
Selaginella moellendorffii
SELMODRAFT_432115
N
0.727
OB07G24850
Oryza brachyantha
OB07G24850
N
0.719
OS07G0567700
Oryza sativa
OS07G0567700
N
0.719