CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_116.43
(
Carica papaya
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
evm.TU.supercontig_116.43
T202508_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RGL2
M02031_2.00
Arabidopsis thaliana
NGTACGGHN
NDCCGTACN
PBM
Weirauch et al.(2014)
pTH8681
0.709
0.709
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_116.43
GRAS
249
612
LVHTLVACAEAVQQENMKLADALVKHIGLLAASQAGAMKKVATYFAEALARRIYRVYPQDGTLDSSYSDILQMHFYETCPYLKFAHFTANQAILEAFASANRVHIIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPSNTDALQQVGWKLAQLAETIGVDFEFQGFVANSLADLEPEMLGIRPAEIEAVAVNSVFELHRLLARPGGIDKVLTSIKAMKPKIITVVEQEANHNGPVFLDRFNEALHYYSSLFDSLEGSGLGTPSQDLVMSELYLGKQICNVVACEGADRVERHETLTQWRTRMESAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQ
Links
Other
GRAS
family TFs
Other
Carica papaya
TFs
101 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy