CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_12.48
(
Carica papaya
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
evm.TU.supercontig_12.48
T202511_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_12.48
GRAS
42
437
MRQLLITCAELLSRSDFPAAQRLLSFLSANSSPYGDSTERLVHQFARALSMRITSHHGSGSVLMMLNLNLNDAALPTPVINSSLEEDRYSSTSQSCYLSLNQITPFIRFSHLTANQAILEAIEVGQQAIHILDLDIMQGVQWPPLMQALAERSHNSLNPPPMLRITATGHDLNMLNTTGERLFRFAQSLGIRFSFHPLLVLNDDPASLALFLIPSALAILPDESLAVNCVLYLHRLIKDDDSRGLRLLLQKIKALNPTVVTVAEREGNHNHPLFLQRFVDALDHYTAIFQSLEATLPPNSRERLGVEQIWFGREIVDIVTAQQENRRERHERFEWWEMMMRGAGFSNVALSPFALSQAKLLLRLHYPSEGYKLQILNNSFFLGWHNRRLFFVSSWR
Links
Other
GRAS
family TFs
Other
Carica papaya
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCM_030498
Theobroma cacao
TCM_030498
N
0.749
Gorai.004G034900
Gossypium raimondii
Gorai.004G034900
N
0.719
cassava3084.m1
Manihot esculenta
cassava3084.m1
N
0.711
orange1.1g048299m.g
Citrus sinensis
orange1.1g048299m.g
N
0.709
Ciclev10008226m.g
Citrus clementina
Ciclev10008226m.g
N
0.709
POPTR_0012s02710
Populus trichocarpa
POPTR_0012s02710
N
0.708
POPTR_0001s47720
Populus trichocarpa
POPTR_0001s47720
N
0.704
cassava4025.m1
Manihot esculenta
cassava4025.m1
N
0.700