CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_81.123
(
Carica papaya
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
evm.TU.supercontig_81.123
T202538_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_81.123
GRAS
1
144
MREINPDIFVHNIVNGAYNAPFFVTRFKEALFHFSALFDKFDATLPREDPARLMLEREFYGREVMNVIACEGLERVERPENYKQWQIRVMRAGFKQLPLDQELMKKFRAKLRACYHKDFVIDEDGSWFLQGWKGRIVYASSCWV
Links
Other
GRAS
family TFs
Other
Carica papaya
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.003G130500
Gossypium raimondii
Gorai.003G130500
N
0.778
orange1.1g046158m.g
Citrus sinensis
orange1.1g046158m.g
N
0.778
SapurV1A.0041s0170
Salix purpurea
SapurV1A.0041s0170
N
0.764
TCM_041814
Theobroma cacao
TCM_041814
N
0.750
TCM_041815
Theobroma cacao
TCM_041815
N
0.743
Pm000719
Prunus mume
Pm000719
N
0.729
POPTR_0009s03800
Populus trichocarpa
POPTR_0009s03800
N
0.729
PRUPE_ppa002797mg
Prunus persica
PRUPE_ppa002797mg
N
0.722
GLYMA15G04173
Glycine max
GLYMA15G04173
N
0.715
Cla013525
Citrullus lanatus
Cla013525
N
0.715
GLYMA13G41240
Glycine max
GLYMA13G41240
N
0.715
Gorai.001G111500
Gossypium raimondii
Gorai.001G111500
N
0.708
Solyc06g076280.1
Solanum lycopersicum
Solyc06g076280.1
N
0.708
Gorai.001G111600
Gossypium raimondii
Gorai.001G111600
N
0.708