Pavir.Ba00562 (Panicum virgatum)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Pavir.Ba00562 T202970_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba00562.1.p GRAS 177 547

Links

Other GRAS family TFs
Other Panicum virgatum TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Si029418m.g Setaria italica Si029418m.g N 0.978
Sb02g037650 Sorghum bicolor Sb02g037650 N 0.962
GRMZM2G431309 Zea mays GRMZM2G431309 N 0.946
GRMZM2G098517 Zea mays GRMZM2G098517 N 0.932
OPUNC07G19030 Oryza punctata OPUNC07G19030 N 0.913
OMERI07G16830 Oryza meridionalis OMERI07G16830 N 0.908
LPERR07G17460 Leersia perrieri LPERR07G17460 N 0.905
OB07G25870 Oryza brachyantha OB07G25870 N 0.905
BRADI1G23350 Brachypodium distachyon BRADI1G23350 N 0.902
OGLUM07G19910 Oryza glumaepatula OGLUM07G19910 N 0.900
CIGR2 Oryza sativa OS07G0583600 N 0.900
ONIVA07G18570 Oryza nivara ONIVA07G18570 N 0.900
ORGLA07G0258500 Oryza glaberrima ORGLA07G0258500 N 0.900
ORUFI07G20980 Oryza rufipogon ORUFI07G20980 N 0.900
BGIOSGA026022 Oryza indica BGIOSGA026022 N 0.900
OBART07G20130 Oryza barthii OBART07G20130 N 0.897
MLOC_65838 Hordeum vulgare MLOC_65838 N 0.894
Traes_2BS_D007D6598 Triticum aestivum Traes_2BS_D007D6598 N 0.886
Traes_2DS_CCA2FCCAD Triticum aestivum Traes_2DS_CCA2FCCAD N 0.881
F775_28371 Aegilops tauschii F775_28371 N 0.878
F775_15940 Aegilops tauschii F775_15940 N 0.848
Traes_5DL_B89CD8432 Triticum aestivum Traes_5DL_B89CD8432 N 0.846
Traes_5BL_A7C4DAE11 Triticum aestivum Traes_5BL_A7C4DAE11 N 0.843
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N 0.740
Traes_5BL_1E751EF1F Triticum aestivum Traes_5BL_1E751EF1F N 0.737
27613.m000642 Ricinus communis 27613.m000642 N 0.726
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.715
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.715
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.715
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.715
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.715
TCM_030733 Theobroma cacao TCM_030733 N 0.715
Pm015021 Prunus mume Pm015021 N 0.713
OMERI10G05450 Oryza meridionalis OMERI10G05450 N 0.713
Pm012019 Prunus mume Pm012019 N 0.713
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.710
BGIOSGA032058 Oryza indica BGIOSGA032058 N 0.710
TCM_002319 Theobroma cacao TCM_002319 N 0.710
OGLUM10G07400 Oryza glumaepatula OGLUM10G07400 N 0.710
OBART10G07700 Oryza barthii OBART10G07700 N 0.710
ORGLA10G0063900 Oryza glaberrima ORGLA10G0063900 N 0.710
OLONG_015869 Oryza longistaminata OLONG_015869 N 0.710
ORUFI10G08100 Oryza rufipogon ORUFI10G08100 N 0.710
OS03G0193000 Oryza sativa OS03G0193000 N 0.707
ORUFI03G06680 Oryza rufipogon ORUFI03G06680 N 0.707
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.707
MDP0000152670 Malus domestica MDP0000152670 N 0.707
OGLUM03G06860 Oryza glumaepatula OGLUM03G06860 N 0.707
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.707
evm.TU.supercontig_12.194 Carica papaya evm.TU.supercontig_12.194 N 0.707
BGIOSGA012030 Oryza indica BGIOSGA012030 N 0.707
ONIVA10G07150 Oryza nivara ONIVA10G07150 N 0.707
ONIVA03G06470 Oryza nivara ONIVA03G06470 N 0.707
PK09018.1 Cannabis sativa PK09018.1 N 0.705
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.705
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.705
MDP0000804652 Malus domestica MDP0000804652 N 0.702
OBART03G06740 Oryza barthii OBART03G06740 N 0.702
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.702
Gorai.002G096300 Gossypium raimondii Gorai.002G096300 N 0.702
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.702
OB03G16920 Oryza brachyantha OB03G16920 N 0.702
OMERI03G06660 Oryza meridionalis OMERI03G06660 N 0.702
ORGLA03G0065600 Oryza glaberrima ORGLA03G0065600 N 0.702
Lus10016596.g Linum usitatissimum Lus10016596.g N 0.702