Pavir.Ia00840 (Panicum virgatum)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Pavir.Ia00840 T203019_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia00840.1.p GRAS 239 617

Links

Other GRAS family TFs
Other Panicum virgatum TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28677.m000055 Ricinus communis 28677.m000055 N 0.708
29692.m000540 Ricinus communis 29692.m000540 N 0.737
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.729
GAI Arabidopsis thaliana AT1G14920 N 0.714
SLR1 Oryza indica BGIOSGA013420 N 0.906
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N 0.711
BRADI1G11090 Brachypodium distachyon BRADI1G11090 N 0.908
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N 0.714
Carubv10008833m.g Capsella rubella Carubv10008833m.g N 0.714
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.734
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.731
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.717
Ca_05046 Cicer arietinum Ca_05046 N 0.729
Ca_13295 Cicer arietinum Ca_13295 I 0.708
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.733
Cla003996 Citrullus lanatus Cla003996 N 0.700
Cucsa.280310 Cucumis sativus Cucsa.280310 N 0.706
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.737
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.717
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.704
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I 0.738
F775_03572 Aegilops tauschii F775_03572 N 0.954
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N 0.711
GLYMA05G27190 Glycine max GLYMA05G27190 N 0.713
GLYMA08G10140 Glycine max GLYMA08G10140 N 0.715
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.708
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.722
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.719
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N 0.714
GRMZM2G024973 Zea mays GRMZM2G024973 N 0.911
GRMZM2G144744 Zea mays GRMZM2G144744 N 0.967
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.721
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.721
LPERR03G26000 Leersia perrieri LPERR03G26000 N 0.903
Lus10009133.g Linum usitatissimum Lus10009133.g N 0.726
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.718
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.715
MDP0000669451 Malus domestica MDP0000669451 I 0.732
mgf008289m Mimulus guttatus mgf008289m N 0.733
mgf025772m Mimulus guttatus mgf025772m N 0.709
MLOC_67940 Hordeum vulgare MLOC_67940 N 0.959
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.710
OB03G38380 Oryza brachyantha OB03G38380 N 0.909
OBART03G31370 Oryza barthii OBART03G31370 N 0.906
OGLUM03G31610 Oryza glumaepatula OGLUM03G31610 N 0.912
OLONG_002563 Oryza longistaminata OLONG_002563 N 0.875
OMERI03G27970 Oryza meridionalis OMERI03G27970 N 0.906
ONIVA03G32670 Oryza nivara ONIVA03G32670 N 0.906
OPUNC03G28530 Oryza punctata OPUNC03G28530 N 0.912
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.731
ORGLA03G0290200 Oryza glaberrima ORGLA03G0290200 N 0.906
ORUFI03G32650 Oryza rufipogon ORUFI03G32650 N 0.903
SLR1 Oryza sativa OS03G0707600 N 0.903
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N 0.994
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.702
PK14700.1 Cannabis sativa PK14700.1 N 0.703
Pm014329 Prunus mume Pm014329 I 0.726
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.723
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.731
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.728
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.717
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.729
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N 0.719
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.722
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.717
Sb01g010660 Sorghum bicolor Sb01g010660 N 0.953
Si039400m.g Setaria italica Si039400m.g N 0.983
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.708
TCM_010965 Theobroma cacao TCM_010965 N 0.720
TCM_019165 Theobroma cacao TCM_019165 N 0.711
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N 0.700
Traes_4AL_77F4CC833 Triticum aestivum Traes_4AL_77F4CC833 N 0.974
Traes_4BL_EDA8441F6 Triticum aestivum Traes_4BL_EDA8441F6 N 0.897
Traes_4BS_2EE4988CD Triticum aestivum Traes_4BS_2EE4988CD N 0.922
Traes_4DS_ADBA6E30A Triticum aestivum Traes_4DS_ADBA6E30A N 0.923
TRIUR3_18790 Triticum urartu TRIUR3_18790 N 0.845
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.719
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.733