Pavir.Ia02739 (Panicum virgatum)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Pavir.Ia02739 T203024_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia02739.1.p GRAS 172 542
Pavir.Ia02739.2.p GRAS 172 542
Pavir.Ia02739.3.p GRAS 172 542
Pavir.Ia02739.4.p GRAS 172 542

Links

Other GRAS family TFs
Other Panicum virgatum TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Ib02999 Panicum virgatum Pavir.Ib02999 N 0.984
Traes_5DL_88247E2B8 Triticum aestivum Traes_5DL_88247E2B8 N 0.881
Traes_5BL_700283665 Triticum aestivum Traes_5BL_700283665 N 0.883
Traes_5BL_04BDEB5D8 Triticum aestivum Traes_5BL_04BDEB5D8 N 0.824
Traes_5AL_83E515188 Triticum aestivum Traes_5AL_83E515188 N 0.873
Traes_5AL_4C72C5BCB Triticum aestivum Traes_5AL_4C72C5BCB N 0.832
Traes_4DL_E50C77AEC Triticum aestivum Traes_4DL_E50C77AEC N 0.797
Traes_4BL_E20E75836 Triticum aestivum Traes_4BL_E20E75836 N 0.797
Traes_4AS_C30034054 Triticum aestivum Traes_4AS_C30034054 N 0.802
TCM_002319 Theobroma cacao TCM_002319 N 0.705
Si035089m.g Setaria italica Si035089m.g N 0.805
Si035052m.g Setaria italica Si035052m.g N 0.970
Sb01g044280 Sorghum bicolor Sb01g044280 N 0.792
Traes_5DL_A39210547 Triticum aestivum Traes_5DL_A39210547 N 0.840
TRIUR3_16715 Triticum urartu TRIUR3_16715 N 0.834
Pavir.Ib00589 Panicum virgatum Pavir.Ib00589 N 0.805
Pavir.Ia04887 Panicum virgatum Pavir.Ia04887 N 0.799
MDP0000152670 Malus domestica MDP0000152670 N 0.702
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.702
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.705
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.707
Pm015021 Prunus mume Pm015021 N 0.707
Pm012019 Prunus mume Pm012019 N 0.702
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.702
TRIUR3_30897 Triticum urartu TRIUR3_30897 N 0.795
TRIUR3_25879 Triticum urartu TRIUR3_25879 N 0.875
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.705
OS03G0193000 Oryza sativa OS03G0193000 N 0.818
ORUFI10G08100 Oryza rufipogon ORUFI10G08100 N 0.886
OB03G16920 Oryza brachyantha OB03G16920 N 0.812
MLOC_36533 Hordeum vulgare MLOC_36533 N 0.858
MLOC_21553 Hordeum vulgare MLOC_21553 N 0.797
LPERR10G05390 Leersia perrieri LPERR10G05390 N 0.892
LPERR03G06070 Leersia perrieri LPERR03G06070 N 0.802
GRMZM5G885274 Zea mays GRMZM5G885274 N 0.786
GRMZM2G116638 Zea mays GRMZM2G116638 N 0.940
GRMZM2G028039 Zea mays GRMZM2G028039 N 0.786
F775_26780 Aegilops tauschii F775_26780 N 0.883
F775_08653 Aegilops tauschii F775_08653 N 0.797
BRADI3G24210 Brachypodium distachyon BRADI3G24210 N 0.873
BGIOSGA032058 Oryza indica BGIOSGA032058 N 0.883
OB10G15940 Oryza brachyantha OB10G15940 N 0.894
OBART03G06740 Oryza barthii OBART03G06740 N 0.813
ORUFI03G06680 Oryza rufipogon ORUFI03G06680 N 0.818
ORGLA10G0063900 Oryza glaberrima ORGLA10G0063900 N 0.886
ORGLA03G0065600 Oryza glaberrima ORGLA03G0065600 N 0.813
OPUNC10G06730 Oryza punctata OPUNC10G06730 N 0.894
ONIVA10G07150 Oryza nivara ONIVA10G07150 N 0.881
ONIVA03G06470 Oryza nivara ONIVA03G06470 N 0.818
OMERI10G05450 Oryza meridionalis OMERI10G05450 N 0.885
OMERI03G06660 Oryza meridionalis OMERI03G06660 N 0.815
OLONG_015869 Oryza longistaminata OLONG_015869 N 0.883
OGLUM10G07400 Oryza glumaepatula OGLUM10G07400 N 0.886
OGLUM03G06860 Oryza glumaepatula OGLUM03G06860 N 0.818
OBART10G07700 Oryza barthii OBART10G07700 N 0.886
BGIOSGA012030 Oryza indica BGIOSGA012030 N 0.818