CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ib01112
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.Ib01112
T203030_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ib01112.1.p
GRAS
119
511
LLHLLMAAAEALSGPHKSRELARVILVRLKQMVSHIGDSAAVSNMERLAAHFTDALQGLLDGSHPVGGAGRHAAAAASHHSHQHTGDVLTAFQMLQDMSPYMKFGHFTANQAILEAVAGDRRVHVVDYDIAEGVQWASLMQAMISRPDGVPPPHLRITAVSRGGGGGARAVQEAGRRLAAFAASIGQPFSFGQCRLDSDERFRPATVRMVKGETLIANCVLSQAAATRTVRRPTGSVASFLAGMATLGAKVVTVVEEDQGEPDKDEEEARGFVARFMEELHRYSAVWDSLEAGFPTQSRMRGLVERAILAPNIAGAVSRAYRAVDSDGEARAGWGEWMRGNGFRAVPLSCFNHSQARLLLGLFNDGYTMEETSPNKIVLGWKARRLLSASVWA
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
18 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si040022m.g
Setaria italica
Si040022m.g
N
0.941
Pavir.Ia03522
Panicum virgatum
Pavir.Ia03522
N
0.936
GRMZM2G055263
Zea mays
GRMZM2G055263
N
0.925
Sb01g040270
Sorghum bicolor
Sb01g040270
N
0.920
OPUNC03G11040
Oryza punctata
OPUNC03G11040
N
0.898
BGIOSGA012273
Oryza indica
BGIOSGA012273
N
0.892
ORUFI03G11840
Oryza rufipogon
ORUFI03G11840
N
0.892
ONIVA03G12680
Oryza nivara
ONIVA03G12680
N
0.892
OGLUM03G11450
Oryza glumaepatula
OGLUM03G11450
N
0.892
ORGLA03G0111000
Oryza glaberrima
ORGLA03G0111000
N
0.884
OB03G21650
Oryza brachyantha
OB03G21650
N
0.879
OMERI03G10770
Oryza meridionalis
OMERI03G10770
N
0.879
TRIUR3_13261
Triticum urartu
TRIUR3_13261
N
0.863
Traes_4AS_19FA06316
Triticum aestivum
Traes_4AS_19FA06316
N
0.863
BRADI1G67340
Brachypodium distachyon
BRADI1G67340
N
0.858
LPERR03G10210
Leersia perrieri
LPERR03G10210
N
0.847
Traes_4BL_CDCFB216C
Triticum aestivum
Traes_4BL_CDCFB216C
N
0.835
Traes_4DL_5B3B57371
Triticum aestivum
Traes_4DL_5B3B57371
N
0.828