CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.J04428
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.J04428
T203040_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J04428.1.p
GRAS
1
267
MQIPTLIDMLASRSEGPPILRLTVADVAPSAPPPALDMSYDELGAKLINFARSRNMSMDFRVVTTSPADAFTSLVDQLRVQQLVLDGTEALVVNCHMLLHTVPDETAGSVSLAQPVSLRTMLLKSLRTLDPNLVVVVEEDADFTAGDVVGRLRAAFNFLWIPYDAVDTFLPKGSEQRRWYEAEIGWKVENVLAQEGVDRVERQEDRARWDQRMRSAGFRAVAFGEEAAGEVKAMLNEHAAGWGMKREDDDLVLTWKGHNVVFASAWA
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OB07G26260
Oryza brachyantha
OB07G26260
N
0.944
OPUNC07G19470
Oryza punctata
OPUNC07G19470
N
0.936
OS07G0589200
Oryza sativa
OS07G0589200
N
0.928
Pavir.J30787
Panicum virgatum
Pavir.J30787
N
0.925
Traes_2DS_FB1D2D1A7
Triticum aestivum
Traes_2DS_FB1D2D1A7
N
0.909
Traes_2DS_7B6E75DD2
Triticum aestivum
Traes_2DS_7B6E75DD2
N
0.908
Traes_2AS_960C7E44E
Triticum aestivum
Traes_2AS_960C7E44E
N
0.897
MLOC_1442
Hordeum vulgare
MLOC_1442
N
0.896