CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J36189
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.J36189
T203093_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J36189.1.p
GRAS
140
513
IRTLLISCAHAVATNNHMGACELLKKIKQHASTTGDATQRVAQCFSKGLEARLVGAGSQLWQVLMAERPSIVEFLKAYRLYFAACSFNKVALSFSTMTILQAMVGKSKLHVVDYGMHFGFQWAGLLRLLAGREGVLPEVKITAIGPPKLKSCPSERFEELGCRLSKWANEFGLASFKFYTIIKKWEDVCIEDLNTDIDEVLVVNDLFSFSTLMDESVFFDRQSPRDTVLSNIKKMRPDVFIQSIWNCSCGSSFLTRFREVMSYYMALFDILDATMPRESKSRVVLEQFVLGYPALNIIACEGPDLVQRPEKYRQWQVRNQRAGLRQLPLKSRIVEVVKDTVQKHHHKDFLICEDGQWLLQGWMGRVLFAHSTWV
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J25051
Panicum virgatum
Pavir.J25051
N
0.893
Pavir.J09125
Panicum virgatum
Pavir.J09125
N
0.882
Pavir.Ha00217
Panicum virgatum
Pavir.Ha00217
N
0.875
Pavir.Hb00457
Panicum virgatum
Pavir.Hb00457
N
0.859
Pavir.J40967
Panicum virgatum
Pavir.J40967
N
0.734
GRMZM2G106356
Zea mays
GRMZM2G106356
N
0.734
Sb05g026250
Sorghum bicolor
Sb05g026250
N
0.721
Pavir.Ca01143
Panicum virgatum
Pavir.Ca01143
N
0.713