CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gfo_R013538
(
Geospiza fortis
)
GTF2I-like
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02946 (GTF2I)
IPR004212
Gfo_R013538
T203569_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GTF2I
M10621_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TFIII_Q6_01
0.793
0.793
GTF2I
M10622_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TFIII_Q6
0.793
0.793
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R013538
GTF2I-like
110
184
LRKSVVEFFCFSYGKALGKSTAVPVPYEEIQRNQSVVIVQGLPEGVTFKHPSNYDVSTLKWILENKSEISFSINR
Gfo_R013538
GTF2I-like
336
410
LRKEVEVLFDKKYAEAIKVEGPAPVPYGAFQSHPEDLFVEGMPDGIPFRRPATYGIPRLERILLAKDRIRFVIKK
Gfo_R013538
GTF2I-like
443
517
LRRMVDQLFCKKYAKALGSNDPRAVPYKKFEAYPTDLYVEGLPENIPFRSPSWYGIPCLEQIIQVGHKIKFVIKR
Gfo_R013538
GTF2I-like
548
622
LRKQVEDIFSVKFAEALGVSESVKVPYSVFESNPDCLLVEGLPEGVPFRSPTWFGIPRLERIIRASNKIKFVIKK
Gfo_R013538
GTF2I-like
709
783
LKEKVEKMFNEKCGEALGRSGPVKVPYALFDTYPEDFHVEGLPEGVPFRQPTTFGIPRLEKILRNRSKIKFIIKK
Gfo_R013538
GTF2I-like
852
926
LREQVNYLFSQKFGEATGMNFPVKVPYRKITNNPGCVLVDGMPPGVAFKAPSYLEPSSMRKILDSAEFIKFTVVR
Links
Other
GTF2I-like
family TFs
Other
Geospiza fortis
TFs
44 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy