CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gtf2ird1
(
Xenopus tropicalis
)
GTF2I-like
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02946 (GTF2I)
IPR004212
XB-GENE-5857402
T203585_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GTF2IRD1
M10618_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BEN_01
0.812
0.812
GTF2IRD1
M10619_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BEN_02
0.812
0.812
GTF2IRD1
M10620_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GTF2IRD1_01
0.812
0.812
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002932338
GTF2I-like
126
200
LRKMVEEIFEVLYSEALGKSNIVPVPYEKVMKEHGSVAVLGLPDGISFRKPADYDLKSLMLILEHSHNIRFKLKI
XP_002932338
GTF2I-like
347
421
LRECVQILFNSRYAEALGLDHMVPVPYRKIACHPEAVEIKGIPDKIPFKRPCTYGVPKLKRILEERHNIHFTIKS
XP_002932338
GTF2I-like
530
604
LRKRVENLFNRKYAKAIGASGPVKVPYAKFLMYPEDLFVLGLPEGVSFRRPNCFGITKLRRILECSNGIQFVVKR
XP_002932338
GTF2I-like
660
734
LREQVQDLFNKKYGEALGIKYPVQVPYKRIKNNPGSVIIEGLPPGIPFRKPCTFGSQNLERILAVAEKIRFTVTR
XP_002932338
GTF2I-like
757
780
LREQVKELFNEKYDHYIFQKNNLA
Links
Other
GTF2I-like
family TFs
Other
Xenopus tropicalis
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
B7ZQJ9
Xenopus laevis
B7ZQJ9
I
0.917
gtf2ird1.S
Xenopus laevis
XB-GENE-5857419
I
0.917
ENSPSIG00000012562
Pelodiscus sinensis
ENSPSIG00000012562
I
0.827
GTF2IRD1
Taeniopygia guttata
ENSTGUG00000003638
I
0.824
ENSMEUG00000012139
Macropus eugenii
ENSMEUG00000012139
I
0.824
Aan_R007261
Calypte anna
Aan_R007261
I
0.824
Gfo_R013537
Geospiza fortis
Gfo_R013537
I
0.824
Brh_R010572
Buceros rhinoceros
Brh_R010572
I
0.821
GTF2IRD1
Canis familiaris
ENSCAFG00000011763
I
0.818
ENSAMEG00000015311
Ailuropoda melanoleuca
ENSAMEG00000015311
I
0.818
ENSMPUG00000016153
Mustela putorius furo
ENSMPUG00000016153
I
0.818
ENSAPLG00000006811
Anas platyrhynchos
ENSAPLG00000006811
I
0.818
Tal_R007678
Tyto alba
Tal_R007678
I
0.818
GTF2IRD1
Felis catus
ENSFCAG00000006551
I
0.818
GTF2IRD1
Dasypus novemcinctus
ENSDNOG00000024296
I
0.815
GTF2IRD1
Sus scrofa
ENSSSCG00000007720
I
0.815
ENSOARG00000011517
Ovis aries
ENSOARG00000011517
I
0.815
Myotis_brandtii_GTF2IRD1_10014286
Myotis brandtii
Myotis_brandtii_GTF2IRD1_10014286
I
0.815
Alligator_sinensis_CCG003099.1
Alligator sinensis
Alligator_sinensis_CCG003099.1
I
0.815
GTF2IRD1
Bos taurus
ENSBTAG00000006212
I
0.815
GTF2IRD1
Myotis lucifugus
ENSMLUG00000001668
I
0.815
GTF2IRD1
Pan troglodytes
ENSPTRG00000019292
I
0.812
ENSPPYG00000017485
Pongo abelii
ENSPPYG00000017485
I
0.812
GTF2IRD1
Equus caballus
ENSECAG00000019745
I
0.812
GTF2IRD1
Homo sapiens
ENSG00000006704
D
0.812
GTF2IRD1
Macaca mulatta
ENSMMUG00000018842
I
0.812
ENSSTOG00000014343
Ictidomys tridecemlineatus
ENSSTOG00000014343
I
0.809
LOC100912262
Rattus norvegicus
ENSRNOG00000050193
I
0.806
Gtf2ird1
Mus musculus
ENSMUSG00000023079
I
0.806
GTF2IRD1
Cavia porcellus
ENSCPOG00000004421
I
0.806
Gtf2ird1
Rattus norvegicus
ENSRNOG00000001478
I
0.806
Cmyd_10014806
Chelonia mydas
Cmyd_10014806
I
0.784
GTF2IRD1
Meleagris gallopavo
ENSMGAG00000016801
I
0.778
ENSLOCG00000002184
Lepisosteus oculatus
ENSLOCG00000002184
I
0.772
ENSLACG00000018407
Latimeria chalumnae
ENSLACG00000018407
I
0.769
ENSAMXG00000007482
Astyanax mexicanus
ENSAMXG00000007482
I
0.759
ENSPFOG00000001233
Poecilia formosa
ENSPFOG00000001233
I
0.756
ENSXMAG00000015294
Xiphophorus maculatus
ENSXMAG00000015294
I
0.756
gtf2ird1
Gasterosteus aculeatus
ENSGACG00000020844
I
0.747
ENSP00000397566
Macaca fascicularis
ENSP00000397566
I
0.747
gtf2ird1
Danio rerio
ENSDARG00000022203
I
0.744
gtf2ird1
Oryzias latipes
ENSORLG00000015316
I
0.735
ENSGMOG00000013638
Gadus morhua
ENSGMOG00000013638
I
0.725
gtf2ird1
Tetraodon nigroviridis
ENSTNIG00000004695
I
0.722
Afo_R005311
Aptenodytes forsteri
Afo_R005311
I
0.707