CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ACEP19049
(
Atta cephalotes
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ACEP19049
T204059_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
VSX1
M03087_2.00
Homo sapiens
YTAATTAN
NTAATTAR
SELEX
Jolma et al.(2013)
VSX1_1
0.693
0.311
VSX1
M03088_2.00
Homo sapiens
NNYAATTRRBN
NVYYAATTRNN
SELEX
Jolma et al.(2013)
VSX1_2
0.693
0.311
VSX1
M04941_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX
0.693
0.311
VSX1
M04944_2.00
Homo sapiens
NTAATTRS
SYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX
0.693
0.311
VSX1
M05869_2.00
Homo sapiens
DGCTAATTAN
NTAATTAGCH
SMiLE-seq
Isakova et al.(2017)
VSX1
0.693
0.311
VSX1
M04942_2.00
Homo sapiens
NTAAYGMN
NKCRTTAN
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1
0.693
0.311
VSX1
M04943_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2
0.693
0.311
VSX1
M04945_2.00
Homo sapiens
NTAATTRG
CYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1
0.693
0.311
VSX1
M04946_2.00
Homo sapiens
NTAAYGAN
NTCRTTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2
0.693
0.311
VAX1
M03168_2.00
Homo sapiens
YTAATKAN
NTMATTAR
SELEX
Jolma et al.(2013)
VAX1_1
0.691
0.200
VAX1
M05182_2.00
Homo sapiens
BTAATTRN
NYAATTAV
SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX
0.691
0.200
VAX1
M05183_2.00
Homo sapiens
BTMATKRN
NYMATKAV
SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX
0.691
0.200
Isl2
M00458_2.00
Mus musculus
NWDWDNN
NNHWHWN
PBM
Berger et al.(2008)
Isl2_3430
0.360
1.000
ISL2
M03177_2.00
Homo sapiens
YTAAKTGB
VCAMTTAR
SELEX
Jolma et al.(2013)
ISL2_1
0.360
1.000
ISL1
M04908_2.00
Homo sapiens
BTAAKTGS
SCAMTTAV
SELEX
Yin et al.(2017)
ISL1_eDBD_HT-SELEX
0.360
1.000
ISL1
M04910_2.00
Homo sapiens
NTAAKTGS
SCAMTTAN
SELEX
Yin et al.(2017)
ISL1_FL_HT-SELEX
0.360
1.000
ISL2
M05204_2.00
Homo sapiens
NTAAKTGS
SCAMTTAN
SELEX
Yin et al.(2017)
ISL2_eDBD_HT-SELEX
0.360
1.000
ISL1
M09128_2.00
Homo sapiens
NYWRAKKGV
BCMMTYWRN
Misc
Kulakovskiy et al.(2013)
ISL1_HUMAN.H11MO.0.A
0.360
1.000
Isl1
M09209_2.00
Mus musculus
NYWRAKKGV
BCMMTYWRN
Misc
Kulakovskiy et al.(2013)
ISL1_MOUSE.H11MO.0.A
0.360
1.000
Isl1
M09578_2.00
Mus musculus
YTAAKKGV
BCMMTTAR
Misc
Heinz et al.(2010)
Neuron-Isl1_GSE31456
0.360
1.000
ISL1
M10634_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ISL1_Q3
0.360
1.000
ISL1
M10635_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ISL1_Q6
0.360
1.000
ISL1
M04909_2.00
Homo sapiens
BTAAKTGS
SCAMTTAV
SELEX
Yin et al.(2017)
ISL1_eDBD_Methyl-HT-SELEX
0.360
1.000
ISL1
M04911_2.00
Homo sapiens
BTAAKTGS
SCAMTTAV
SELEX
Yin et al.(2017)
ISL1_FL_Methyl-HT-SELEX
0.360
1.000
ISL2
M05205_2.00
Homo sapiens
NTAAKTGN
NCAMTTAN
SELEX
Yin et al.(2017)
ISL2_eDBD_Methyl-HT-SELEX
0.360
1.000
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ACEP19049-PA
Homeodomain
213
257
TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR
Links
Other
Homeodomain
family TFs
Other
Atta cephalotes
TFs
1281 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy