AMTR_s00148p00033940 (Amborella trichopoda)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AMTR_s00148p00033940 T204407_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-9
M06898_2.00
Arabidopsis thaliana
DWWDRTAATGATKAH

DTMATCATTAYHWWH
Dap-seq
OMalley et al.(2016)
PHV_col_a
0.798 0.912
ATHB-9
M02682_2.00
Arabidopsis thaliana
HNHHGTAATGATTRCDYBS

SVRHGYAATCATTACDDND
SELEX
Mathelier et al.(2014)
MA0573.1
0.798 0.912
ATHB-9
M10623_2.00
Arabidopsis thaliana
HNHHGTAATGATTRCDYBS

SVRHGYAATCATTACDDND
Transfac
Matys et al.(2006)
P$ATHB9_01
0.798 0.912
ATHB-15
M00864_2.00
Arabidopsis thaliana
AATAATTACT

AGTAATTATT
PBM
Franco-Zorrilla et al.(2014)
ICU4
0.793 0.877
ATHB-15
M06899_2.00
Arabidopsis thaliana
DWWDRTAATGATKAH

DTMATCATTAYHWWH
Dap-seq
OMalley et al.(2016)
ATHB15_col_a
0.793 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN08358 Homeodomain 15 75

Links

Other Homeodomain family TFs
Other Amborella trichopoda TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CBG23697_CONSTRUCT PBM CONSTRUCTS CBG23697_CONSTRUCT D 0.000
CBG01251 Caenorhabditis briggsae CBG01251 I 0.000
CBG22881 Caenorhabditis briggsae CBG22881 I 0.000
CBG22888 Caenorhabditis briggsae CBG22888 I 0.000
CRE11317 Caenorhabditis remanei CRE11317 I 0.000
CRE27862 Caenorhabditis remanei CRE27862 I 0.000