CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Aqu1.227912
(
Amphimedon queenslandica
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
Aqu1.227912
T204438_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Pknox1
M00399_2.00
Mus musculus
HGACRNNN
NNNYGTCD
PBM
Berger et al.(2008)
Pknox1_2364
0.600
0.509
Pknox2
M00468_2.00
Mus musculus
NNNGACRNNN
NNNYGTCNNN
PBM
Berger et al.(2008)
Pknox2_3077
0.600
0.509
PKNOX1
M03178_2.00
Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
PKNOX1_1
0.600
0.509
PKNOX2
M03195_2.00
Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
PKNOX2_1
0.600
0.509
Pknox2
M03270_2.00
Mus musculus
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
Pknox2_1
0.600
0.509
PKNOX1
M05206_2.00
Homo sapiens
TGACASSTGTCA
TGACASSTGTCA
SELEX
Yin et al.(2017)
PKNOX1_eDBD_HT-SELEX
0.600
0.509
PKNOX1
M05208_2.00
Homo sapiens
TGACAGCTGTCA
TGACAGCTGTCA
SELEX
Yin et al.(2017)
PKNOX1_FL_HT-SELEX
0.600
0.509
PKNOX2
M05246_2.00
Homo sapiens
TGACABVTGTCA
TGACABVTGTCA
SELEX
Yin et al.(2017)
PKNOX2_eDBD_HT-SELEX
0.600
0.509
PKNOX1
M09150_2.00
Homo sapiens
TGABTGRCRGV
BCYGYCAVTCA
Misc
Kulakovskiy et al.(2013)
PKNX1_HUMAN.H11MO.0.B
0.600
0.509
Pknox1
M09175_2.00
Mus musculus
TGABTGRCRGV
BCYGYCAVTCA
Misc
Kulakovskiy et al.(2013)
PKNX1_MOUSE.H11MO.0.A
0.600
0.509
PKNOX1
M10712_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PREP1_Q3
0.600
0.509
PKNOX1
M05207_2.00
Homo sapiens
YGWCASSTGWCR
YGWCASSTGWCR
SELEX
Yin et al.(2017)
PKNOX1_eDBD_Methyl-HT-SELEX
0.600
0.509
PKNOX1
M05209_2.00
Homo sapiens
TGACABVTGTCA
TGACABVTGTCA
SELEX
Yin et al.(2017)
PKNOX1_FL_Methyl-HT-SELEX
0.600
0.509
PKNOX2
M05247_2.00
Homo sapiens
TGACASSTGTCA
TGACASSTGTCA
SELEX
Yin et al.(2017)
PKNOX2_eDBD_Methyl-HT-SELEX
0.600
0.509
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PAC:15726440
Homeodomain
147
204
KGKREKTSPASQKLLKEWLFSHSRCPYPTEDDKQNLCRMTGLSLQQLNNWFINARRRI
Links
Other
Homeodomain
family TFs
Other
Amphimedon queenslandica
TFs
135 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy