ATHB-15 (Arabidopsis thaliana)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AT1G52150 T204459_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-15
M00864_2.00		 Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4		 (Direct) (Direct)
ATHB-15
M06899_2.00		 Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.861 0.911
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.861 0.911
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.861 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00864_2.00 Homeodomain 16 75

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G52150.1 Homeodomain 16 75
AT1G52150.2 Homeodomain 16 75
AT1G52150.3 Homeodomain 16 75

Links

Other Homeodomain family TFs
Other Arabidopsis thaliana TFs

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336 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action