CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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WOX9
(
Arabidopsis thaliana
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
AT2G33880
T204481_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a protein with similarity to WUS type homeodomain protein. Required for meristem growth and development and acts through positive regulation of WUS. Loss of function phenotypes include embryo lethality, hyponastic cotyledons, reduced root development and smaller meristems. Phenotypes can be rescued by addition of sucrose in the growth media. Overexpression can partially rescue the triple mutant cytokinin receptor phenotype suggesting HB-3 is a downstream effector of cytokinin signaling.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WOX11
M06916_2.00
Arabidopsis thaliana
ADTTAATTAVD
HBTAATTAAHT
Dap-seq
OMalley et al.(2016)
WOX11_col_a
0.726
0.719
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G33880.1
Homeodomain
52
113
PKPRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKH
AT2G33880.2
Homeodomain
52
113
PKPRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKH
Links
Other
Homeodomain
family TFs
Other
Arabidopsis thaliana
TFs
218 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA10G08030
Glycine max
GLYMA10G08030
I
0.867
GLYMA07G32430
Glycine max
GLYMA07G32430
I
0.867
GLYMA13G24150
Glycine max
GLYMA13G24150
I
0.867
Carubv10025224m.g
Capsella rubella
Carubv10025224m.g
I
0.867
SapurV1A.0012s0880
Salix purpurea
SapurV1A.0012s0880
I
0.867
Ciclev10015562m.g
Citrus clementina
Ciclev10015562m.g
I
0.867
WOX9
Arabidopsis lyrata
Al_scaffold_0004_1872
I
0.867
POPTR_0004s05090
Populus trichocarpa
POPTR_0004s05090
I
0.867
CM1489.70.nc
Lotus japonicus
CM1489.70.nc
I
0.867
gene29786-v1.0-hybrid
Fragaria vesca
gene29786-v1.0-hybrid
I
0.867
evm.TU.supercontig_7.12
Carica papaya
evm.TU.supercontig_7.12
I
0.867
VIT_10s0003g00560
Vitis vinifera
VIT_10s0003g00560
I
0.867
Cagra.1195s0012
Capsella grandiflora
Cagra.1195s0012
I
0.867
cassava4506.m1
Manihot esculenta
cassava4506.m1
I
0.867
cassava40675.m1
Manihot esculenta
cassava40675.m1
I
0.867
29900.m001555
Ricinus communis
29900.m001555
I
0.867
Pm010370
Prunus mume
Pm010370
I
0.867
Thhalv10016784m.g
Eutrema salsugineum
Thhalv10016784m.g
I
0.867
MTR_2g015000
Medicago truncatula
MTR_2g015000
I
0.867
Bostr.23794s0703
Boechera stricta
Bostr.23794s0703
I
0.867
Aquca_036_00007
Aquilegia coerulea
Aquca_036_00007
I
0.867
Ca_00357
Cicer arietinum
Ca_00357
I
0.867
Ca_06365
Cicer arietinum
Ca_06365
I
0.867
Bra005464
Brassica rapa
Bra005464
I
0.867
GLYMA13G21860
Glycine max
GLYMA13G21860
I
0.867
Lus10005282.g
Linum usitatissimum
Lus10005282.g
I
0.867
MDP0000729328
Malus domestica
MDP0000729328
I
0.867
Bo4g041330
Brassica oleracea
Bo4g041330
I
0.867
SapurV1A.0270s0270
Salix purpurea
SapurV1A.0270s0270
I
0.867
Bo3g027500
Brassica oleracea
Bo3g027500
I
0.867
MDP0000232004
Malus domestica
MDP0000232004
I
0.867
PRUPE_ppa019841mg
Prunus persica
PRUPE_ppa019841mg
I
0.867
orange1.1g036145m.g
Citrus sinensis
orange1.1g036145m.g
I
0.867
AMTR_s00021p00189010
Amborella trichopoda
AMTR_s00021p00189010
I
0.867
TCM_029776
Theobroma cacao
TCM_029776
I
0.867
Gorai.009G165700
Gossypium raimondii
Gorai.009G165700
I
0.867
POPTR_0011s05980
Populus trichocarpa
POPTR_0011s05980
I
0.867
Eucgr.D00577
Eucalyptus grandis
Eucgr.D00577
I
0.866
mgf001579m
Mimulus guttatus
mgf001579m
I
0.865
Solyc02g077390.1
Solanum lycopersicum
Solyc02g077390.1
I
0.855
PGSC0003DMG400010725
Solanum tuberosum
PGSC0003DMG400010725
I
0.855
ONIVA01G29060
Oryza nivara
ONIVA01G29060
I
0.844
Cla009819
Citrullus lanatus
Cla009819
I
0.844
OMERI01G23480
Oryza meridionalis
OMERI01G23480
I
0.844
OBART01G25820
Oryza barthii
OBART01G25820
I
0.844
OGLUM01G29670
Oryza glumaepatula
OGLUM01G29670
I
0.844
GSMUA_Achr8G27170_001
Musa acuminata
GSMUA_Achr8G27170_001
I
0.844
OB01G35000
Oryza brachyantha
OB01G35000
I
0.844
Cucsa.046640
Cucumis sativus
Cucsa.046640
I
0.844
GSMUA_Achr9G06660_001
Musa acuminata
GSMUA_Achr9G06660_001
I
0.844
Gorai.011G031300
Gossypium raimondii
Gorai.011G031300
I
0.844
BGIOSGA001059
Oryza indica
BGIOSGA001059
I
0.844
Bra022960
Brassica rapa
Bra022960
I
0.844
LPERR01G22080
Leersia perrieri
LPERR01G22080
I
0.844
OS01G0667450
Oryza sativa
OS01G0667450
I
0.844
MTR_7g025010
Medicago truncatula
MTR_7g025010
I
0.844
ORGLA01G0211300
Oryza glaberrima
ORGLA01G0211300
I
0.844
gene28935-v1.0-hybrid
Fragaria vesca
gene28935-v1.0-hybrid
I
0.834
GRMZM2G031882
Zea mays
GRMZM2G031882
I
0.833
GRMZM2G133972
Zea mays
GRMZM2G133972
I
0.833
Pavir.Eb02702
Panicum virgatum
Pavir.Eb02702
I
0.833
OPUNC05G23480
Oryza punctata
OPUNC05G23480
I
0.828
BGIOSGA020366
Oryza indica
BGIOSGA020366
I
0.828
OBART05G25900
Oryza barthii
OBART05G25900
I
0.828
OS05G0564500
Oryza sativa
OS05G0564500
I
0.828
ORUFI05G27780
Oryza rufipogon
ORUFI05G27780
I
0.828
Si004249m.g
Setaria italica
Si004249m.g
I
0.828
ONIVA05G27800
Oryza nivara
ONIVA05G27800
I
0.828
OGLUM05G27500
Oryza glumaepatula
OGLUM05G27500
I
0.828
ORGLA05G0223800
Oryza glaberrima
ORGLA05G0223800
I
0.828
Cagra.2097s0014
Capsella grandiflora
Cagra.2097s0014
I
0.818
Carubv10027735m.g
Capsella rubella
Carubv10027735m.g
I
0.818
WOX8
Arabidopsis lyrata
scaffold_800245.1
I
0.818
Bo2g127670
Brassica oleracea
Bo2g127670
I
0.818
Bra022008
Brassica rapa
Bra022008
I
0.818
GRMZM2G409881
Zea mays
GRMZM2G409881
I
0.816
Sb09g028562
Sorghum bicolor
Sb09g028562
I
0.816
Si025013m.g
Setaria italica
Si025013m.g
I
0.816
Pavir.Ca00938
Panicum virgatum
Pavir.Ca00938
I
0.816
WOX8
Arabidopsis thaliana
AT5G45980
I
0.814
Thhalv10001099m.g
Eutrema salsugineum
Thhalv10001099m.g
I
0.798
Bostr.8819s0128
Boechera stricta
Bostr.8819s0128
I
0.796
MLOC_7925
Hordeum vulgare
MLOC_7925
I
0.794
TRAES3BF022100010CFD_g
Triticum aestivum
TRAES3BF022100010CFD_g
I
0.794
F775_23099
Aegilops tauschii
F775_23099
I
0.783
LPERR07G23520
Leersia perrieri
LPERR07G23520
I
0.759
cassava4770.m1
Manihot esculenta
cassava4770.m1
I
0.748
PDK_20s1465351g003
Phoenix dactylifera
PDK_20s1465351g003
I
0.739
PGSC0003DMG400027030
Solanum tuberosum
PGSC0003DMG400027030
I
0.739
Solyc06g072890.1
Solanum lycopersicum
Solyc06g072890.1
I
0.739
mgf017527m
Mimulus guttatus
mgf017527m
I
0.732
Gorai.007G346300
Gossypium raimondii
Gorai.007G346300
I
0.726
Gorai.013G196400
Gossypium raimondii
Gorai.013G196400
I
0.726
Traes_2BS_8A1FE01EE
Triticum aestivum
Traes_2BS_8A1FE01EE
I
0.726
Pavir.Ia03448
Panicum virgatum
Pavir.Ia03448
I
0.726
Pavir.Fb01029
Panicum virgatum
Pavir.Fb01029
I
0.726
Traes_2DS_B5227B5F6
Triticum aestivum
Traes_2DS_B5227B5F6
I
0.726
gene30337-v1.0-hybrid
Fragaria vesca
gene30337-v1.0-hybrid
I
0.726
evm.TU.supercontig_73.3
Carica papaya
evm.TU.supercontig_73.3
I
0.726
MDP0000136426
Malus domestica
MDP0000136426
I
0.726
orange1.1g047211m.g
Citrus sinensis
orange1.1g047211m.g
I
0.726
Pavir.Ba00249
Panicum virgatum
Pavir.Ba00249
I
0.726
Si039112m.g
Setaria italica
Si039112m.g
I
0.726
MDP0000524885
Malus domestica
MDP0000524885
I
0.726
TCM_025805
Theobroma cacao
TCM_025805
I
0.726
Eucgr.A02149
Eucalyptus grandis
Eucgr.A02149
I
0.726
Si030836m.g
Setaria italica
Si030836m.g
I
0.726
TRAES3BF079200050CFD_g
Triticum aestivum
TRAES3BF079200050CFD_g
I
0.726
mgf016673m
Mimulus guttatus
mgf016673m
I
0.726
Aquca_014_00949
Aquilegia coerulea
Aquca_014_00949
I
0.726
Bostr.19046s0084
Boechera stricta
Bostr.19046s0084
I
0.726
Cucsa.336980
Cucumis sativus
Cucsa.336980
I
0.726
Ca_08180
Cicer arietinum
Ca_08180
I
0.726
30072.m000927
Ricinus communis
30072.m000927
I
0.726
cassava15562.m1
Manihot esculenta
cassava15562.m1
I
0.726
Ca_19701
Cicer arietinum
Ca_19701
I
0.726
Cagra.2098s0022
Capsella grandiflora
Cagra.2098s0022
I
0.726
VIT_08s0056g01200
Vitis vinifera
VIT_08s0056g01200
I
0.726
Traes_4AS_EC04D9E8A
Triticum aestivum
Traes_4AS_EC04D9E8A
I
0.726
Carubv10016081m.g
Capsella rubella
Carubv10016081m.g
I
0.726
Pavir.J33010
Panicum virgatum
Pavir.J33010
I
0.726
Traes_4DL_5E79CC79C
Triticum aestivum
Traes_4DL_5E79CC79C
I
0.726
Carubv10003719m.g
Capsella rubella
Carubv10003719m.g
I
0.726
TRIUR3_34876
Triticum urartu
TRIUR3_34876
I
0.726
Cagra.6254s0027
Capsella grandiflora
Cagra.6254s0027
I
0.726
Ciclev10021682m.g
Citrus clementina
Ciclev10021682m.g
I
0.726
ORGLA08G0063600
Oryza glaberrima
ORGLA08G0063600
I
0.726
WOX11
Arabidopsis lyrata
fgenesh2_kg.3__312__AT3G03660.1
I
0.726
GLYMA03G01000
Glycine max
GLYMA03G01000
I
0.726
GLYMA19G29660
Glycine max
GLYMA19G29660
I
0.726
F775_22811
Aegilops tauschii
F775_22811
I
0.726
F775_11947
Aegilops tauschii
F775_11947
I
0.726
Bra036446
Brassica rapa
Bra036446
I
0.726
BRADI1G17420
Brachypodium distachyon
BRADI1G17420
I
0.726
BRADI3G18800
Brachypodium distachyon
BRADI3G18800
I
0.726
GRMZM2G162481
Zea mays
GRMZM2G162481
I
0.726
GRMZM2G170958
Zea mays
GRMZM2G170958
I
0.726
GSMUA_Achr6G15910_001
Musa acuminata
GSMUA_Achr6G15910_001
I
0.726
GSMUA_Achr8G01590_001
Musa acuminata
GSMUA_Achr8G01590_001
I
0.726
GSMUA_Achr9G05010_001
Musa acuminata
GSMUA_Achr9G05010_001
I
0.726
GSMUA_Achr5G27730_001
Musa acuminata
GSMUA_Achr5G27730_001
I
0.726
Thhalv10022222m.g
Eutrema salsugineum
Thhalv10022222m.g
I
0.726
GRMZM2G314064
Zea mays
GRMZM2G314064
I
0.726
GSMUA_Achr10G12820_001
Musa acuminata
GSMUA_Achr10G12820_001
I
0.726
Bra031980
Brassica rapa
Bra031980
I
0.726
Bra023638
Brassica rapa
Bra023638
I
0.726
WOX6
Oryza indica
BGIOSGA010824
I
0.726
BGIOSGA026413
Oryza indica
BGIOSGA026413
I
0.726
WOX10
Oryza indica
BGIOSGA027391
I
0.726
WOX12
Arabidopsis thaliana
AT5G17810
I
0.726
WOX11
Arabidopsis thaliana
AT3G03660
D
0.726
WOX12
Arabidopsis lyrata
Al_scaffold_0006_1694
I
0.726
AMTR_s00119p00100440
Amborella trichopoda
AMTR_s00119p00100440
I
0.726
Bo11772s010
Brassica oleracea
Bo11772s010
I
0.726
Bo1g153650
Brassica oleracea
Bo1g153650
I
0.726
Bo9g159820
Brassica oleracea
Bo9g159820
I
0.726
Bra002108
Brassica rapa
Bra002108
I
0.726
LjSGA_037808.1
Lotus japonicus
LjSGA_037808.1
I
0.726
LjT26C04.20.nd
Lotus japonicus
LjT26C04.20.nd
I
0.726
Bo5g148780
Brassica oleracea
Bo5g148780
I
0.726
Bo2g013980
Brassica oleracea
Bo2g013980
I
0.726
Bo2g062660
Brassica oleracea
Bo2g062660
I
0.726
Si015065m.g
Setaria italica
Si015065m.g
I
0.726
LPERR03G13850
Leersia perrieri
LPERR03G13850
I
0.726
ORUFI07G27650
Oryza rufipogon
ORUFI07G27650
I
0.726
ORUFI08G08400
Oryza rufipogon
ORUFI08G08400
I
0.726
OS03G0325600
Oryza sativa
OS03G0325600
I
0.726
ORUFI03G16410
Oryza rufipogon
ORUFI03G16410
I
0.726
Pavir.J23422
Panicum virgatum
Pavir.J23422
I
0.726
ORGLA03G0151500
Oryza glaberrima
ORGLA03G0151500
I
0.726
ORGLA07G0211000
Oryza glaberrima
ORGLA07G0211000
I
0.726
SapurV1A.1660s0010
Salix purpurea
SapurV1A.1660s0010
I
0.726
WOX11
Oryza sativa
OS07G0684900
I
0.726
WOX10
Oryza sativa
OS08G0242400
I
0.726
Sb02g043300
Sorghum bicolor
Sb02g043300
I
0.726
Sb07g007600
Sorghum bicolor
Sb07g007600
I
0.726
SapurV1A.0631s0110
Salix purpurea
SapurV1A.0631s0110
I
0.726
Sb01g036670
Sorghum bicolor
Sb01g036670
I
0.726
PRUPE_ppa026303mg
Prunus persica
PRUPE_ppa026303mg
I
0.726
POPTR_0013s06310
Populus trichocarpa
POPTR_0013s06310
I
0.726
POPTR_0019s05730
Populus trichocarpa
POPTR_0019s05730
I
0.726
OPUNC07G25100
Oryza punctata
OPUNC07G25100
I
0.726
OPUNC03G15320
Oryza punctata
OPUNC03G15320
I
0.726
OB08G17020
Oryza brachyantha
OB08G17020
I
0.726
Thhalv10015651m.g
Eutrema salsugineum
Thhalv10015651m.g
I
0.726
MTR_7g086940
Medicago truncatula
MTR_7g086940
I
0.726
MTR_6g027390
Medicago truncatula
MTR_6g027390
I
0.726
MLOC_65745
Hordeum vulgare
MLOC_65745
I
0.726
MLOC_6669
Hordeum vulgare
MLOC_6669
I
0.726
LPERR07G23470
Leersia perrieri
LPERR07G23470
I
0.726
OBART03G15820
Oryza barthii
OBART03G15820
I
0.726
OMERI07G23310
Oryza meridionalis
OMERI07G23310
I
0.726
ONIVA07G26430
Oryza nivara
ONIVA07G26430
I
0.726
ONIVA08G08030
Oryza nivara
ONIVA08G08030
I
0.726
OBART07G26670
Oryza barthii
OBART07G26670
I
0.726
OGLUM08G08120
Oryza glumaepatula
OGLUM08G08120
I
0.726
OGLUM03G15990
Oryza glumaepatula
OGLUM03G15990
I
0.726
OGLUM07G26700
Oryza glumaepatula
OGLUM07G26700
I
0.726
GSMUA_Achr10G05090_001
Musa acuminata
GSMUA_Achr10G05090_001
I
0.723
MTR_4g088080
Medicago truncatula
MTR_4g088080
I
0.709
OS07G0533201
Oryza sativa
OS07G0533201
N
0.706
OMERI07G13960
Oryza meridionalis
OMERI07G13960
N
0.706
TRIUR3_34808
Triticum urartu
TRIUR3_34808
I
0.706
ORGLA07G0240100
Oryza glaberrima
ORGLA07G0240100
N
0.706
Pm025458
Prunus mume
Pm025458
I
0.706
MTR_4g088070
Medicago truncatula
MTR_4g088070
I
0.684
GSMUA_Achr3G09460_001
Musa acuminata
GSMUA_Achr3G09460_001
I
0.682
Pavir.Ib01521
Panicum virgatum
Pavir.Ib01521
I
0.658
Bo9g070070
Brassica oleracea
Bo9g070070
I
0.654
PDK_20s13009443g001
Phoenix dactylifera
PDK_20s13009443g001
I
0.654
Bra017448
Brassica rapa
Bra017448
I
0.654
OB10G14840
Oryza brachyantha
OB10G14840
I
0.631
Bo8g106350
Brassica oleracea
Bo8g106350
I
0.614
Thhalv10009654m.g
Eutrema salsugineum
Thhalv10009654m.g
I
0.614
Bra026791
Brassica rapa
Bra026791
I
0.614
SELMODRAFT_123325
Selaginella moellendorffii
SELMODRAFT_123325
I
0.612
SELMODRAFT_115439
Selaginella moellendorffii
SELMODRAFT_115439
I
0.612