HAT3.1 (Arabidopsis thaliana)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AT3G19510 T204494_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the PHD-finger homeodomain protein family. The HAT3.1 homeodomain is highly divergent in sequence even at positions that are almost invariable among homeodomains. HAT3.1 shows a preference for the sequence T(A/G)(A/C)ACCA, different from those bound by other homeodomains.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HAT3.1
M02044_2.00
Arabidopsis thaliana
NTRHACYNNN

NNNRGTDYAN
PBM
Weirauch et al.(2014)
pTH7371
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02044_2.00 Homeodomain 51 101

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G19510.1 Homeodomain 619 669
AT3G19510.2 Homeodomain 619 669

Links

Other Homeodomain family TFs
Other Arabidopsis thaliana TFs

3 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
HAT3.1 Arabidopsis lyrata fgenesh2_kg.3__2167__AT3G19510.1 I 0.634
Bostr.19424s0710 Boechera stricta Bostr.19424s0710 I 0.614