CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LD
(
Arabidopsis thaliana
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
AT4G02560
T204499_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT4G02560.1
Homeodomain
66
122
KRPRDLLNPKAVKYLQAVFAIKDAISKRESREISALFGITVAQVREFFVTQKTRVRK
AT4G02560.2
Homeodomain
66
122
KRPRDLLNPKAVKYLQAVFAIKDAISKRESREISALFGITVAQVREFFVTQKTRVRK
Links
Other
Homeodomain
family TFs
Other
Arabidopsis thaliana
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LD
Arabidopsis lyrata
scaffold_604015.1
N
0.867
Thhalv10028403m.g
Eutrema salsugineum
Thhalv10028403m.g
N
0.849
Bostr.2983s0206
Boechera stricta
Bostr.2983s0206
N
0.844
Cagra.0635s0026
Capsella grandiflora
Cagra.0635s0026
N
0.840
Carubv10003204m.g
Capsella rubella
Carubv10003204m.g
N
0.840