PRH (Arabidopsis thaliana)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AT4G29940 T204509_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the PHD-finger homeodomain protein family. The HAT3.1 homeodomain is highly divergent in sequence even at positions that are almost invariable among homeodomains. HAT3.1 shows a preference for the sequence T(A/G)(A/C)ACCA, different from those bound by other homeodomains.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.696 0.679
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G29940.1 Homeodomain 454 509
AT4G29940.2 Homeodomain 454 509

Links

Other Homeodomain family TFs
Other Arabidopsis thaliana TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRHA Arabidopsis lyrata scaffold_701235.1 I 0.853
Bostr.7867s0841 Boechera stricta Bostr.7867s0841 I 0.813
Thhalv10024489m.g Eutrema salsugineum Thhalv10024489m.g I 0.813
Cagra.0268s0009 Capsella grandiflora Cagra.0268s0009 I 0.809
Carubv10004175m.g Capsella rubella Carubv10004175m.g I 0.809
Bo1g014710 Brassica oleracea Bo1g014710 I 0.789
Bra011153 Brassica rapa Bra011153 I 0.781
Bo3g175850 Brassica oleracea Bo3g175850 I 0.739
Bra010310 Brassica rapa Bra010310 I 0.739
MTR_2g038000 Medicago truncatula MTR_2g038000 D 0.696
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.687
Gorai.009G002500 Gossypium raimondii Gorai.009G002500 I 0.668
mgf003961m Mimulus guttatus mgf003961m I 0.657
gene17249-v1.0-hybrid Fragaria vesca gene17249-v1.0-hybrid I 0.650
GLYMA09G06730 Glycine max GLYMA09G06730 I 0.649
Pm008905 Prunus mume Pm008905 I 0.629
PRUPE_ppa023964mg Prunus persica PRUPE_ppa023964mg I 0.629
SapurV1A.0140s0170 Salix purpurea SapurV1A.0140s0170 N 0.628
POPTR_0018s13920 Populus trichocarpa POPTR_0018s13920 N 0.626
cassava27173.m1 Manihot esculenta cassava27173.m1 I 0.626
POPTR_0006s07520 Populus trichocarpa POPTR_0006s07520 N 0.626
GLYMA15G17956 Glycine max GLYMA15G17956 I 0.617
chr4.CM0244.10.nd Lotus japonicus chr4.CM0244.10.nd I 0.614
Ca_08838 Cicer arietinum Ca_08838 I 0.611