RLT2 (Arabidopsis thaliana)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AT5G44180 T204530_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.665 0.737
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G44180.1 Homeodomain 18 74
AT5G44180.2 Homeodomain 18 74
AT5G44180.3 Homeodomain 18 74

Links

Other Homeodomain family TFs
Other Arabidopsis thaliana TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.850
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.850
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.850
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.850
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.850
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.839
Bo7g067190 Brassica oleracea Bo7g067190 I 0.838
Bra033725 Brassica rapa Bra033725 I 0.836
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.832
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.831
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.828
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.828
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.828
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.828
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.827
29983.m003128 Ricinus communis 29983.m003128 I 0.827
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.827
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.821
Ca_11272 Cicer arietinum Ca_11272 I 0.814
PK06068.1 Cannabis sativa PK06068.1 I 0.810
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.806
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.806
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.800
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.800
TCM_008214 Theobroma cacao TCM_008214 I 0.794
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.794
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.794
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.794
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.771
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.771
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.771
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.754
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.752
Lus10017688.g Linum usitatissimum Lus10017688.g N 0.739
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.728
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.728
Bra010869 Brassica rapa Bra010869 I 0.695
Bo3g143570 Brassica oleracea Bo3g143570 I 0.695
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.680
MTR_4g078860 Medicago truncatula MTR_4g078860 N 0.680
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.680
TCM_029805 Theobroma cacao TCM_029805 I 0.680
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.674
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.669
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.669
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.669
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.669
OBART05G25730 Oryza barthii OBART05G25730 I 0.669
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.669
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.669
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.668
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.667
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.667
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.666
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.665
RLT1 Arabidopsis thaliana AT1G28420 D 0.665
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.665
Ca_06343 Cicer arietinum Ca_06343 I 0.664
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.664
PK13272.1 Cannabis sativa PK13272.1 I 0.664
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.664
Ca_00337 Cicer arietinum Ca_00337 I 0.664
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.664
Cla009803 Citrullus lanatus Cla009803 I 0.664
Pm010098 Prunus mume Pm010098 I 0.664
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.664
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.664
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.664
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.664
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.664
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.664
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.664
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.664
MDP0000192108 Malus domestica MDP0000192108 I 0.664
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.664
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.664
Bra032908 Brassica rapa Bra032908 I 0.663
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.662
Bo5g055970 Brassica oleracea Bo5g055970 I 0.662
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.661
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.654
PDK_20s1402391g002 Phoenix dactylifera PDK_20s1402391g002 I 0.654
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.653
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.653
MDP0000288192 Malus domestica MDP0000288192 I 0.652
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.643
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.643
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.642
MDP0000207866 Malus domestica MDP0000207866 I 0.641
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.641
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.641
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.641
Cla008712 Citrullus lanatus Cla008712 I 0.641
Ca_21400 Cicer arietinum Ca_21400 I 0.641
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.641
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.641
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.637
MTR_5g089870 Medicago truncatula MTR_5g089870 N 0.637
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.634
mgf006858m Mimulus guttatus mgf006858m I 0.633
mgf006635m Mimulus guttatus mgf006635m I 0.632
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.631
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.631
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.629
F775_01844 Aegilops tauschii F775_01844 I 0.629
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.629
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.626
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.626
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.626
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.626
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.626
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.626
OB01G35240 Oryza brachyantha OB01G35240 I 0.626
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.626
OS01G0672201 Oryza sativa OS01G0672201 I 0.626
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.626
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.626
Si004333m.g Setaria italica Si004333m.g I 0.626
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.622
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.622
Si020949m.g Setaria italica Si020949m.g I 0.620
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.620
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.620
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.614
30190.m011307 Ricinus communis 30190.m011307 I 0.600