CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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WOX8
(
Arabidopsis thaliana
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
AT5G45980
T204531_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a protein with similarity to WUS type homeodomain protein. Required for meristem growth and development and acts through positive regulation of WUS. Loss of function phenotypes include embryo lethality, hyponastic cotyledons, reduced root development and smaller meristems. Phenotypes can be rescued by addition of sucrose in the growth media. Overexpression can partially rescue the triple mutant cytokinin receptor phenotype suggesting HB-3 is a downstream effector of cytokinin signaling.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WOX11
M06916_2.00
Arabidopsis thaliana
ADTTAATTAVD
HBTAATTAAHT
Dap-seq
OMalley et al.(2016)
WOX11_col_a
0.684
0.667
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G45980.1
Homeodomain
52
113
PKPRWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKH
Links
Other
Homeodomain
family TFs
Other
Arabidopsis thaliana
TFs
260 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra022008
Brassica rapa
Bra022008
I
0.862
Bo2g127670
Brassica oleracea
Bo2g127670
I
0.862
Carubv10027735m.g
Capsella rubella
Carubv10027735m.g
I
0.862
Cagra.2097s0014
Capsella grandiflora
Cagra.2097s0014
I
0.862
WOX8
Arabidopsis lyrata
scaffold_800245.1
I
0.862
Thhalv10001099m.g
Eutrema salsugineum
Thhalv10001099m.g
I
0.841
Bostr.8819s0128
Boechera stricta
Bostr.8819s0128
I
0.840
Thhalv10016784m.g
Eutrema salsugineum
Thhalv10016784m.g
I
0.814
POPTR_0004s05090
Populus trichocarpa
POPTR_0004s05090
I
0.814
Lus10005282.g
Linum usitatissimum
Lus10005282.g
I
0.814
Bostr.23794s0703
Boechera stricta
Bostr.23794s0703
I
0.814
AMTR_s00021p00189010
Amborella trichopoda
AMTR_s00021p00189010
I
0.814
MDP0000232004
Malus domestica
MDP0000232004
I
0.814
MDP0000729328
Malus domestica
MDP0000729328
I
0.814
Aquca_036_00007
Aquilegia coerulea
Aquca_036_00007
I
0.814
Bra005464
Brassica rapa
Bra005464
I
0.814
Cagra.1195s0012
Capsella grandiflora
Cagra.1195s0012
I
0.814
Gorai.009G165700
Gossypium raimondii
Gorai.009G165700
I
0.814
evm.TU.supercontig_7.12
Carica papaya
evm.TU.supercontig_7.12
I
0.814
GLYMA07G32430
Glycine max
GLYMA07G32430
I
0.814
GLYMA10G08030
Glycine max
GLYMA10G08030
I
0.814
GLYMA13G24150
Glycine max
GLYMA13G24150
I
0.814
TCM_029776
Theobroma cacao
TCM_029776
I
0.814
Ciclev10015562m.g
Citrus clementina
Ciclev10015562m.g
I
0.814
Carubv10025224m.g
Capsella rubella
Carubv10025224m.g
I
0.814
PGSC0003DMG400010725
Solanum tuberosum
PGSC0003DMG400010725
I
0.814
gene29786-v1.0-hybrid
Fragaria vesca
gene29786-v1.0-hybrid
I
0.814
GLYMA13G21860
Glycine max
GLYMA13G21860
I
0.814
orange1.1g036145m.g
Citrus sinensis
orange1.1g036145m.g
I
0.814
VIT_10s0003g00560
Vitis vinifera
VIT_10s0003g00560
I
0.814
SapurV1A.0270s0270
Salix purpurea
SapurV1A.0270s0270
I
0.814
SapurV1A.0012s0880
Salix purpurea
SapurV1A.0012s0880
I
0.814
Ca_00357
Cicer arietinum
Ca_00357
I
0.814
29900.m001555
Ricinus communis
29900.m001555
I
0.814
WOX9
Arabidopsis thaliana
AT2G33880
I
0.814
Ca_06365
Cicer arietinum
Ca_06365
I
0.814
Pm010370
Prunus mume
Pm010370
I
0.814
Solyc02g077390.1
Solanum lycopersicum
Solyc02g077390.1
I
0.814
cassava40675.m1
Manihot esculenta
cassava40675.m1
I
0.814
Bo3g027500
Brassica oleracea
Bo3g027500
I
0.814
Bo4g041330
Brassica oleracea
Bo4g041330
I
0.814
MTR_2g015000
Medicago truncatula
MTR_2g015000
I
0.814
POPTR_0011s05980
Populus trichocarpa
POPTR_0011s05980
I
0.814
PRUPE_ppa019841mg
Prunus persica
PRUPE_ppa019841mg
I
0.814
WOX9
Arabidopsis lyrata
Al_scaffold_0004_1872
I
0.814
CM1489.70.nc
Lotus japonicus
CM1489.70.nc
I
0.814
cassava4506.m1
Manihot esculenta
cassava4506.m1
I
0.814
Eucgr.D00577
Eucalyptus grandis
Eucgr.D00577
I
0.813
mgf001579m
Mimulus guttatus
mgf001579m
I
0.812
Si004249m.g
Setaria italica
Si004249m.g
I
0.808
GRMZM2G031882
Zea mays
GRMZM2G031882
I
0.803
GRMZM2G133972
Zea mays
GRMZM2G133972
I
0.803
Pavir.Eb02702
Panicum virgatum
Pavir.Eb02702
I
0.803
ONIVA01G29060
Oryza nivara
ONIVA01G29060
I
0.791
MTR_7g025010
Medicago truncatula
MTR_7g025010
I
0.791
ORUFI05G27780
Oryza rufipogon
ORUFI05G27780
I
0.791
BGIOSGA020366
Oryza indica
BGIOSGA020366
I
0.791
LPERR01G22080
Leersia perrieri
LPERR01G22080
I
0.791
ONIVA05G27800
Oryza nivara
ONIVA05G27800
I
0.791
BGIOSGA001059
Oryza indica
BGIOSGA001059
I
0.791
OB01G35000
Oryza brachyantha
OB01G35000
I
0.791
OGLUM01G29670
Oryza glumaepatula
OGLUM01G29670
I
0.791
OGLUM05G27500
Oryza glumaepatula
OGLUM05G27500
I
0.791
OMERI01G23480
Oryza meridionalis
OMERI01G23480
I
0.791
OBART05G25900
Oryza barthii
OBART05G25900
I
0.791
Cucsa.046640
Cucumis sativus
Cucsa.046640
I
0.791
OBART01G25820
Oryza barthii
OBART01G25820
I
0.791
GSMUA_Achr9G06660_001
Musa acuminata
GSMUA_Achr9G06660_001
I
0.791
Bra022960
Brassica rapa
Bra022960
I
0.791
ORGLA05G0223800
Oryza glaberrima
ORGLA05G0223800
I
0.791
OPUNC05G23480
Oryza punctata
OPUNC05G23480
I
0.791
OS05G0564500
Oryza sativa
OS05G0564500
I
0.791
ORGLA01G0211300
Oryza glaberrima
ORGLA01G0211300
I
0.791
Cla009819
Citrullus lanatus
Cla009819
I
0.791
OS01G0667450
Oryza sativa
OS01G0667450
I
0.791
Gorai.011G031300
Gossypium raimondii
Gorai.011G031300
I
0.791
GSMUA_Achr8G27170_001
Musa acuminata
GSMUA_Achr8G27170_001
I
0.791
gene28935-v1.0-hybrid
Fragaria vesca
gene28935-v1.0-hybrid
I
0.781
Si025013m.g
Setaria italica
Si025013m.g
I
0.779
Sb09g028562
Sorghum bicolor
Sb09g028562
I
0.779
GRMZM2G409881
Zea mays
GRMZM2G409881
I
0.779
Pavir.Ca00938
Panicum virgatum
Pavir.Ca00938
I
0.779
TRAES3BF022100010CFD_g
Triticum aestivum
TRAES3BF022100010CFD_g
I
0.775
MLOC_7925
Hordeum vulgare
MLOC_7925
I
0.775
F775_23099
Aegilops tauschii
F775_23099
I
0.770
LPERR07G23520
Leersia perrieri
LPERR07G23520
I
0.718
PDK_20s1465351g003
Phoenix dactylifera
PDK_20s1465351g003
I
0.718
cassava4770.m1
Manihot esculenta
cassava4770.m1
I
0.707
Pm025458
Prunus mume
Pm025458
I
0.706
PGSC0003DMG400027030
Solanum tuberosum
PGSC0003DMG400027030
I
0.698
Solyc06g072890.1
Solanum lycopersicum
Solyc06g072890.1
I
0.698
MTR_4g088070
Medicago truncatula
MTR_4g088070
I
0.692
mgf017527m
Mimulus guttatus
mgf017527m
I
0.691
Traes_4DL_5E79CC79C
Triticum aestivum
Traes_4DL_5E79CC79C
I
0.685
Traes_4AS_EC04D9E8A
Triticum aestivum
Traes_4AS_EC04D9E8A
I
0.685
TRAES3BF079200050CFD_g
Triticum aestivum
TRAES3BF079200050CFD_g
I
0.685
Traes_2DS_B5227B5F6
Triticum aestivum
Traes_2DS_B5227B5F6
I
0.685
Si015065m.g
Setaria italica
Si015065m.g
I
0.685
TCM_025805
Theobroma cacao
TCM_025805
I
0.685
Si039112m.g
Setaria italica
Si039112m.g
I
0.685
VIT_08s0056g01200
Vitis vinifera
VIT_08s0056g01200
I
0.685
TRIUR3_34876
Triticum urartu
TRIUR3_34876
I
0.685
Traes_2BS_8A1FE01EE
Triticum aestivum
Traes_2BS_8A1FE01EE
I
0.685
Si030836m.g
Setaria italica
Si030836m.g
I
0.685
Bostr.19046s0084
Boechera stricta
Bostr.19046s0084
I
0.685
orange1.1g047211m.g
Citrus sinensis
orange1.1g047211m.g
I
0.685
Pavir.Ba00249
Panicum virgatum
Pavir.Ba00249
I
0.685
MDP0000524885
Malus domestica
MDP0000524885
I
0.685
MDP0000136426
Malus domestica
MDP0000136426
I
0.685
Gorai.007G346300
Gossypium raimondii
Gorai.007G346300
I
0.685
Gorai.013G196400
Gossypium raimondii
Gorai.013G196400
I
0.685
Pavir.Fb01029
Panicum virgatum
Pavir.Fb01029
I
0.685
Pavir.Ia03448
Panicum virgatum
Pavir.Ia03448
I
0.685
Thhalv10022222m.g
Eutrema salsugineum
Thhalv10022222m.g
I
0.685
Thhalv10015651m.g
Eutrema salsugineum
Thhalv10015651m.g
I
0.685
SapurV1A.1660s0010
Salix purpurea
SapurV1A.1660s0010
I
0.685
SapurV1A.0631s0110
Salix purpurea
SapurV1A.0631s0110
I
0.685
Pavir.J23422
Panicum virgatum
Pavir.J23422
I
0.685
Pavir.J33010
Panicum virgatum
Pavir.J33010
I
0.685
gene30337-v1.0-hybrid
Fragaria vesca
gene30337-v1.0-hybrid
I
0.685
evm.TU.supercontig_73.3
Carica papaya
evm.TU.supercontig_73.3
I
0.685
mgf016673m
Mimulus guttatus
mgf016673m
I
0.685
Aquca_014_00949
Aquilegia coerulea
Aquca_014_00949
I
0.685
Cucsa.336980
Cucumis sativus
Cucsa.336980
I
0.685
cassava15562.m1
Manihot esculenta
cassava15562.m1
I
0.685
Ca_19701
Cicer arietinum
Ca_19701
I
0.685
30072.m000927
Ricinus communis
30072.m000927
I
0.685
LjT26C04.20.nd
Lotus japonicus
LjT26C04.20.nd
I
0.685
Cagra.2098s0022
Capsella grandiflora
Cagra.2098s0022
I
0.685
Ciclev10021682m.g
Citrus clementina
Ciclev10021682m.g
I
0.685
Eucgr.A02149
Eucalyptus grandis
Eucgr.A02149
I
0.685
LjSGA_037808.1
Lotus japonicus
LjSGA_037808.1
I
0.685
Carubv10016081m.g
Capsella rubella
Carubv10016081m.g
I
0.685
Cagra.6254s0027
Capsella grandiflora
Cagra.6254s0027
I
0.685
Carubv10003719m.g
Capsella rubella
Carubv10003719m.g
I
0.685
Ca_08180
Cicer arietinum
Ca_08180
I
0.685
POPTR_0019s05730
Populus trichocarpa
POPTR_0019s05730
I
0.685
LPERR07G23470
Leersia perrieri
LPERR07G23470
I
0.685
MLOC_65745
Hordeum vulgare
MLOC_65745
I
0.685
Bo5g148780
Brassica oleracea
Bo5g148780
I
0.685
LPERR03G13850
Leersia perrieri
LPERR03G13850
I
0.685
GSMUA_Achr9G05010_001
Musa acuminata
GSMUA_Achr9G05010_001
I
0.685
GSMUA_Achr6G15910_001
Musa acuminata
GSMUA_Achr6G15910_001
I
0.685
GSMUA_Achr8G01590_001
Musa acuminata
GSMUA_Achr8G01590_001
I
0.685
MLOC_6669
Hordeum vulgare
MLOC_6669
I
0.685
Bo2g062660
Brassica oleracea
Bo2g062660
I
0.685
OGLUM03G15990
Oryza glumaepatula
OGLUM03G15990
I
0.685
Bo2g013980
Brassica oleracea
Bo2g013980
I
0.685
OGLUM07G26700
Oryza glumaepatula
OGLUM07G26700
I
0.685
OBART07G26670
Oryza barthii
OBART07G26670
I
0.685
OBART03G15820
Oryza barthii
OBART03G15820
I
0.685
MTR_6g027390
Medicago truncatula
MTR_6g027390
I
0.685
MTR_7g086940
Medicago truncatula
MTR_7g086940
I
0.685
GSMUA_Achr5G27730_001
Musa acuminata
GSMUA_Achr5G27730_001
I
0.685
Sb07g007600
Sorghum bicolor
Sb07g007600
I
0.685
F775_11947
Aegilops tauschii
F775_11947
I
0.685
F775_22811
Aegilops tauschii
F775_22811
I
0.685
Bra023638
Brassica rapa
Bra023638
I
0.685
BRADI3G18800
Brachypodium distachyon
BRADI3G18800
I
0.685
BRADI1G17420
Brachypodium distachyon
BRADI1G17420
I
0.685
Bra031980
Brassica rapa
Bra031980
I
0.685
Bra036446
Brassica rapa
Bra036446
I
0.685
GLYMA03G01000
Glycine max
GLYMA03G01000
I
0.685
Bra002108
Brassica rapa
Bra002108
I
0.685
GRMZM2G170958
Zea mays
GRMZM2G170958
I
0.685
GRMZM2G314064
Zea mays
GRMZM2G314064
I
0.685
GSMUA_Achr10G12820_001
Musa acuminata
GSMUA_Achr10G12820_001
I
0.685
GRMZM2G162481
Zea mays
GRMZM2G162481
I
0.685
GLYMA19G29660
Glycine max
GLYMA19G29660
I
0.685
Bo9g159820
Brassica oleracea
Bo9g159820
I
0.685
AMTR_s00119p00100440
Amborella trichopoda
AMTR_s00119p00100440
I
0.685
OGLUM08G08120
Oryza glumaepatula
OGLUM08G08120
I
0.685
OB08G17020
Oryza brachyantha
OB08G17020
I
0.685
ORUFI03G16410
Oryza rufipogon
ORUFI03G16410
I
0.685
ORUFI07G27650
Oryza rufipogon
ORUFI07G27650
I
0.685
ORGLA08G0063600
Oryza glaberrima
ORGLA08G0063600
I
0.685
BGIOSGA026413
Oryza indica
BGIOSGA026413
I
0.685
WOX10
Oryza indica
BGIOSGA027391
I
0.685
ORUFI08G08400
Oryza rufipogon
ORUFI08G08400
I
0.685
OS03G0325600
Oryza sativa
OS03G0325600
I
0.685
WOX10
Oryza sativa
OS08G0242400
I
0.685
WOX6
Oryza indica
BGIOSGA010824
I
0.685
WOX12
Arabidopsis thaliana
AT5G17810
I
0.685
WOX11
Oryza sativa
OS07G0684900
I
0.685
POPTR_0013s06310
Populus trichocarpa
POPTR_0013s06310
I
0.685
ORGLA07G0211000
Oryza glaberrima
ORGLA07G0211000
I
0.685
PRUPE_ppa026303mg
Prunus persica
PRUPE_ppa026303mg
I
0.685
Sb02g043300
Sorghum bicolor
Sb02g043300
I
0.685
ORGLA03G0151500
Oryza glaberrima
ORGLA03G0151500
I
0.685
OPUNC03G15320
Oryza punctata
OPUNC03G15320
I
0.685
Bo1g153650
Brassica oleracea
Bo1g153650
I
0.685
ONIVA08G08030
Oryza nivara
ONIVA08G08030
I
0.685
ONIVA07G26430
Oryza nivara
ONIVA07G26430
I
0.685
Bo11772s010
Brassica oleracea
Bo11772s010
I
0.685
OMERI07G23310
Oryza meridionalis
OMERI07G23310
I
0.685
WOX12
Arabidopsis lyrata
Al_scaffold_0006_1694
I
0.685
Sb01g036670
Sorghum bicolor
Sb01g036670
I
0.685
OPUNC07G25100
Oryza punctata
OPUNC07G25100
I
0.685
WOX11
Arabidopsis lyrata
fgenesh2_kg.3__312__AT3G03660.1
I
0.684
WOX11
Arabidopsis thaliana
AT3G03660
D
0.684
GSMUA_Achr10G05090_001
Musa acuminata
GSMUA_Achr10G05090_001
I
0.681
Bo9g070070
Brassica oleracea
Bo9g070070
I
0.675
Bra017448
Brassica rapa
Bra017448
I
0.675
TRIUR3_34808
Triticum urartu
TRIUR3_34808
I
0.665
MTR_4g088080
Medicago truncatula
MTR_4g088080
I
0.661
OS07G0533201
Oryza sativa
OS07G0533201
N
0.653
OMERI07G13960
Oryza meridionalis
OMERI07G13960
N
0.653
ORGLA07G0240100
Oryza glaberrima
ORGLA07G0240100
N
0.653
GSMUA_Achr3G09460_001
Musa acuminata
GSMUA_Achr3G09460_001
I
0.640
Bra026791
Brassica rapa
Bra026791
I
0.634
Bo8g106350
Brassica oleracea
Bo8g106350
I
0.634
Thhalv10009654m.g
Eutrema salsugineum
Thhalv10009654m.g
I
0.634
PDK_20s13009443g001
Phoenix dactylifera
PDK_20s13009443g001
I
0.629
Pavir.Ib01521
Panicum virgatum
Pavir.Ib01521
I
0.617
Bo9g138280
Brassica oleracea
Bo9g138280
I
0.615
SELMODRAFT_123325
Selaginella moellendorffii
SELMODRAFT_123325
I
0.608
SELMODRAFT_115439
Selaginella moellendorffii
SELMODRAFT_115439
I
0.608
POPTR_0007s14130
Populus trichocarpa
POPTR_0007s14130
I
0.608
Gorai.013G264200
Gossypium raimondii
Gorai.013G264200
I
0.607
Bo2g026810
Brassica oleracea
Bo2g026810
I
0.607
Thhalv10014457m.g
Eutrema salsugineum
Thhalv10014457m.g
I
0.607
WOX2
Arabidopsis thaliana
AT5G59340
I
0.607
orange1.1g046813m.g
Citrus sinensis
orange1.1g046813m.g
I
0.607
SapurV1A.0040s0170
Salix purpurea
SapurV1A.0040s0170
I
0.607
LjSGA_080218.1
Lotus japonicus
LjSGA_080218.1
I
0.607
Cla008386
Citrullus lanatus
Cla008386
I
0.607
29876.m000245
Ricinus communis
29876.m000245
I
0.607
cassava38630.m1
Manihot esculenta
cassava38630.m1
I
0.607
MTR_4g063735
Medicago truncatula
MTR_4g063735
I
0.607
Ca_16691
Cicer arietinum
Ca_16691
I
0.607
WOX2
Arabidopsis lyrata
Al_scaffold_0008_2427
I
0.607
POPTR_0009s03460
Populus trichocarpa
POPTR_0009s03460
I
0.607
Solyc06g076000.1
Solanum lycopersicum
Solyc06g076000.1
I
0.607
PGSC0003DMG400030316
Solanum tuberosum
PGSC0003DMG400030316
I
0.607
TCM_041866
Theobroma cacao
TCM_041866
I
0.607
Gorai.001G108900
Gossypium raimondii
Gorai.001G108900
I
0.607
mgf023275m
Mimulus guttatus
mgf023275m
I
0.607
GLYMA12G06895
Glycine max
GLYMA12G06895
I
0.607
GLYMA11G14940
Glycine max
GLYMA11G14940
I
0.607
evm.TU.supercontig_190.1
Carica papaya
evm.TU.supercontig_190.1
I
0.607
Aquca_027_00327
Aquilegia coerulea
Aquca_027_00327
I
0.607
Ciclev10029815m.g
Citrus clementina
Ciclev10029815m.g
I
0.607
Cagra.1317s0079
Capsella grandiflora
Cagra.1317s0079
I
0.607
Carubv10028333m.g
Capsella rubella
Carubv10028333m.g
I
0.607
AMTR_s00012p00149750
Amborella trichopoda
AMTR_s00012p00149750
I
0.607
Bostr.26833s0310
Boechera stricta
Bostr.26833s0310
I
0.607
OSTLU_27102
Ostreococcus lucimarinus
OSTLU_27102
N
0.606
WOX6
Arabidopsis thaliana
AT2G01500
I
0.603
Cagra.2235s0008
Capsella grandiflora
Cagra.2235s0008
I
0.603
Carubv10018421m.g
Capsella rubella
Carubv10018421m.g
I
0.603
Bostr.7903s0027
Boechera stricta
Bostr.7903s0027
I
0.603
Thhalv10001174m.g
Eutrema salsugineum
Thhalv10001174m.g
I
0.603
Ciclev10027270m.g
Citrus clementina
Ciclev10027270m.g
I
0.603
PFS2
Arabidopsis lyrata
fgenesh2_kg.5__60__AT2G01500.1
I
0.603
orange1.1g046372m.g
Citrus sinensis
orange1.1g046372m.g
I
0.603
PRUPE_ppa021063mg
Prunus persica
PRUPE_ppa021063mg
I
0.602
gene14133-v1.0-hybrid
Fragaria vesca
gene14133-v1.0-hybrid
I
0.602
Sb06g030700
Sorghum bicolor
Sb06g030700
I
0.600
WOX4
Vitis vinifera
VIT_18s0001g10160
I
0.599
AMTR_s00405p00009920
Amborella trichopoda
AMTR_s00405p00009920
I
0.599