CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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WOX2
(
Arabidopsis thaliana
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
AT5G59340
T204537_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Its mRNA is expressed in the initiating vascular primordium of the cotyledons during heart and torpedo stages.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WUS
M06905_2.00
Arabidopsis thaliana
TRAWTGAWTGA
TCAWTCAWTYA
Dap-seq
OMalley et al.(2016)
WUS1_col_a
0.779
0.702
WUS
M06906_2.00
Arabidopsis thaliana
TGAWTGAWTGW
WCAWTCAWTCA
Dap-seq
OMalley et al.(2016)
WUS1_colamp_a
0.779
0.702
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G59340.1
Homeodomain
11
72
SSSRWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARQRQ
Links
Other
Homeodomain
family TFs
Other
Arabidopsis thaliana
TFs
480 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy