Bo1g014710 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo1g014710 T204852_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.705 0.714
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g014710.1 Homeodomain 449 504

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra011153 Brassica rapa Bra011153 I 0.858
Bostr.7867s0841 Boechera stricta Bostr.7867s0841 I 0.826
Thhalv10024489m.g Eutrema salsugineum Thhalv10024489m.g I 0.826
Cagra.0268s0009 Capsella grandiflora Cagra.0268s0009 I 0.812
Carubv10004175m.g Capsella rubella Carubv10004175m.g I 0.812
PRH Arabidopsis thaliana AT4G29940 I 0.789
PRHA Arabidopsis lyrata scaffold_701235.1 I 0.778
Bra010310 Brassica rapa Bra010310 I 0.731
Bo3g175850 Brassica oleracea Bo3g175850 I 0.731
MTR_2g038000 Medicago truncatula MTR_2g038000 D 0.705
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.696
Ca_08838 Cicer arietinum Ca_08838 I 0.687
29671.m000294 Ricinus communis 29671.m000294 I 0.671
GLYMA13G00540 Glycine max GLYMA13G00540 I 0.662
GLYMA09G06730 Glycine max GLYMA09G06730 I 0.661
GLYMA15G17956 Glycine max GLYMA15G17956 I 0.661
GLYMA17G06690 Glycine max GLYMA17G06690 I 0.658
PRUPE_ppa023964mg Prunus persica PRUPE_ppa023964mg I 0.643
Pm008905 Prunus mume Pm008905 I 0.643
gene17249-v1.0-hybrid Fragaria vesca gene17249-v1.0-hybrid I 0.642
cassava27173.m1 Manihot esculenta cassava27173.m1 I 0.639
SapurV1A.0140s0170 Salix purpurea SapurV1A.0140s0170 N 0.631
POPTR_0006s07520 Populus trichocarpa POPTR_0006s07520 N 0.630
POPTR_0018s13920 Populus trichocarpa POPTR_0018s13920 N 0.629
chr4.CM0244.10.nd Lotus japonicus chr4.CM0244.10.nd I 0.627
Gorai.009G002500 Gossypium raimondii Gorai.009G002500 I 0.614
mgf003961m Mimulus guttatus mgf003961m I 0.604