Bo2g134170 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo2g134170 T204880_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-X
M06902_2.00
Arabidopsis thaliana
HHAATRATTRN

NYAATYATTDD
Dap-seq
OMalley et al.(2016)
ATHB18_col_a
0.795 0.754
ATHB-X
M06903_2.00
Arabidopsis thaliana
NYAATGATTRV

BYAATCATTRN
Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a
0.795 0.754
HAT22
M06926_2.00
Arabidopsis thaliana
NNYAATCATT

AATGATTRNN
Dap-seq
OMalley et al.(2016)
HAT22_col_a
0.790 0.737
HAT1
M02047_2.00
Arabidopsis thaliana
NMATGATTRN

NYAATCATKN
PBM
Weirauch et al.(2014)
pTH8107
0.769 0.684
HAT1
M06922_2.00
Arabidopsis thaliana
NHAATGATTRNNWDW

WHWNNYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT1_col_a
0.769 0.684
HAT1
M06923_2.00
Arabidopsis thaliana
NYAATCATTDN

NHAATGATTRN
Dap-seq
OMalley et al.(2016)
HAT1_colamp_a
0.769 0.684
HAT2
M06929_2.00
Arabidopsis thaliana
NHAATGATTRN

NYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT2_colamp_a
0.769 0.667
HAT2
M06930_2.00
Arabidopsis thaliana
WNYAATCATWD

HWATGATTRNW
Dap-seq
OMalley et al.(2016)
HAT2_col_v31
0.769 0.667
HAT3
M00728_2.00
Arabidopsis thaliana
DTGATTRV

BYAATCAH
PBM
Chang et al.(2013)
pTH7400
0.724 0.684
ATHB-4
M01065_2.00
Arabidopsis thaliana
NBMTGCATRNN

NNYATGCAKVN
PBM
Sullivan et al.(2014)
pTH8184
0.724 0.667
ATHB-4
M02042_2.00
Arabidopsis thaliana
NNWTNATTRN

NYAATNAWNN
PBM
Weirauch et al.(2014)
pTH8667
0.724 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g134170.1 Homeodomain 61 117

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

692 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000015432 Ailuropoda melanoleuca ENSAMEG00000015432 I 0.000
ENSOANG00000007331 Ornithorhynchus anatinus ENSOANG00000007331 I 0.000
ENSOARG00000018575 Ovis aries ENSOARG00000018575 I 0.000
ENSSARG00000000845 Sorex araneus ENSSARG00000000845 I 0.000
ZKSCAN2 Myotis lucifugus ENSMLUG00000010566 I 0.000
ZSCAN29 Homo sapiens ENSG00000140265 D 0.000
ZSCAN29 Gorilla gorilla ENSGGOG00000002879 I 0.000
Zscan29 Mus musculus ENSMUSG00000050619 I 0.000
ZSCAN29 Dasypus novemcinctus ENSDNOG00000018427 I 0.000
ZSCAN29 Myotis lucifugus ENSMLUG00000008922 I 0.000
ZSCAN29 Canis familiaris ENSCAFG00000012056 I 0.000
ZSCAN29 Oryctolagus cuniculus ENSOCUG00000011265 I 0.000