Bo3g175850 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo3g175850 T204909_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.673 0.732
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g175850.1 Homeodomain 436 491

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra010310 Brassica rapa Bra010310 I 0.867
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.795
Bostr.7867s0841 Boechera stricta Bostr.7867s0841 I 0.771
Thhalv10024489m.g Eutrema salsugineum Thhalv10024489m.g I 0.771
Cagra.0268s0009 Capsella grandiflora Cagra.0268s0009 I 0.768
Carubv10004175m.g Capsella rubella Carubv10004175m.g I 0.768
SapurV1A.0140s0170 Salix purpurea SapurV1A.0140s0170 N 0.756
POPTR_0018s13920 Populus trichocarpa POPTR_0018s13920 N 0.754
POPTR_0006s07520 Populus trichocarpa POPTR_0006s07520 N 0.753
PRHA Arabidopsis lyrata scaffold_701235.1 I 0.745
PRH Arabidopsis thaliana AT4G29940 I 0.739
Bra011153 Brassica rapa Bra011153 I 0.739
Bo1g014710 Brassica oleracea Bo1g014710 I 0.731
mgf003961m Mimulus guttatus mgf003961m I 0.719
gene17249-v1.0-hybrid Fragaria vesca gene17249-v1.0-hybrid I 0.684
GLYMA09G06730 Glycine max GLYMA09G06730 I 0.683
MTR_2g038000 Medicago truncatula MTR_2g038000 D 0.673
cassava27173.m1 Manihot esculenta cassava27173.m1 I 0.669
PRUPE_ppa023964mg Prunus persica PRUPE_ppa023964mg I 0.664
Pm008905 Prunus mume Pm008905 I 0.664
chr4.CM0244.10.nd Lotus japonicus chr4.CM0244.10.nd I 0.657
Ca_08838 Cicer arietinum Ca_08838 I 0.654
GLYMA15G17956 Glycine max GLYMA15G17956 I 0.652
Gorai.009G002500 Gossypium raimondii Gorai.009G002500 I 0.644
29671.m000294 Ricinus communis 29671.m000294 I 0.638
Solyc07g008730.1 Solanum lycopersicum Solyc07g008730.1 I 0.636
PGSC0003DMG400028740 Solanum tuberosum PGSC0003DMG400028740 I 0.636
GLYMA13G00540 Glycine max GLYMA13G00540 I 0.621
GLYMA17G06690 Glycine max GLYMA17G06690 I 0.617