Bra005588 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra005588 T205049_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATML1
M02048_2.00
Arabidopsis thaliana
NNHNRHYRNN

NNYRDYNDNN
PBM
Weirauch et al.(2014)
pTH8203
0.763 0.789
PDF2
M06921_2.00
Arabidopsis thaliana
WNVGAATATTCYHTN

NADRGAATATTCBNW
Dap-seq
OMalley et al.(2016)
PDF2_col
0.763 0.789
ATML1
M10626_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ML1_01
0.763 0.789
PDF2
M10625_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PDF2_01
0.763 0.789
HDG11
M02039_2.00
Arabidopsis thaliana
DCATTWAWKD

HMWTWAATGH
PBM
Weirauch et al.(2014)
pTH7664
0.741 0.702
HDG11
M06904_2.00
Arabidopsis thaliana
DCATTWAWTRH

DYAWTWAATGH
Dap-seq
OMalley et al.(2016)
EDT1_col
0.741 0.702
PK24181.1
M01252_2.00
Cannabis sativa
NNNNNNNHDH

DHDNNNNNNN
PBM
Lambert et al.(2019)
pTH11300
0.741 0.684
ANL2
M02046_2.00
Arabidopsis thaliana
NCATTWATKNN

NNMATWAATGN
PBM
Weirauch et al.(2014)
pTH8244
0.739 0.684
ANL2
M06919_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_col_a
0.739 0.684
ANL2
M06920_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_colamp_a
0.739 0.684
HDG9
M10628_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG9_01
0.738 0.614
HDG1
M06917_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_col100_a
0.734 0.649
HDG1
M06918_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_colamp_a
0.734 0.649
HDG7
M06931_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG7_col_a
0.696 0.632
HDG7
M10629_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG7_01
0.696 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra005588.1-P Homeodomain 61 117

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

Invalid Input OrderBy

608 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action