Bra009618 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra009618 T205067_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATH1
M10627_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATH1_01
0.765 0.644
MEIS3
M03093_2.00
Homo sapiens
DTGACANN

NNTGTCAH
SELEX
Jolma et al.(2013)
MEIS3_1
0.663 0.444
MEIS3
M03094_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
MEIS3_2
0.663 0.444
MEIS3
M04951_2.00
Homo sapiens
TGWCABVTGWCA

TGWCABVTGWCA
SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX
0.663 0.444
MEIS3
M04952_2.00
Homo sapiens
YGWCABVTGWCR

YGWCABVTGWCR
SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX
0.663 0.444
Q5EVH4_OIKDI
M02227_2.00
Oikopleura dioica
NTGACAKN

NMTGTCAN
PBM
Weirauch et al.(2014)
pTH6041
0.626 0.578
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra009618.1-P Homeodomain 361 408

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

1019 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_14972 Aegilops tauschii F775_14972 N 0.000
F775_11193 Aegilops tauschii F775_11193 N 0.000
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.000
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.000
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.000
BRADI2G55540 Brachypodium distachyon BRADI2G55540 N 0.000
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.000
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.000
BRADI2G23870 Brachypodium distachyon BRADI2G23870 N 0.000
Bo8g112550 Brassica oleracea Bo8g112550 N 0.000
Bo5g081360 Brassica oleracea Bo5g081360 N 0.000
Bo5g008880 Brassica oleracea Bo5g008880 N 0.000
Bra031621 Brassica rapa Bra031621 N 0.000
Bra018638 Brassica rapa Bra018638 N 0.000
PK05257.1 Cannabis sativa PK05257.1 N 0.000
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.000
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.000
Ca_16482 Cicer arietinum Ca_16482 N 0.000
Ca_07051 Cicer arietinum Ca_07051 N 0.000
Cla015481 Citrullus lanatus Cla015481 N 0.000
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.000
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.000
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.000
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.000
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.000
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.000
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.000
Eucgr.J01266 Eucalyptus grandis Eucgr.J01266 N 0.000
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.000
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.000
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.000
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.000
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.000
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.000
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.000
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.000
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.000
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.000
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.000
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.000
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.000
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.000
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.000
LPERR01G32600 Leersia perrieri LPERR01G32600 N 0.000
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.000
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.000
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.000
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.000
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.000
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.000
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.000
MDP0000144266 Malus domestica MDP0000144266 N 0.000
MDP0000300013 Malus domestica MDP0000300013 N 0.000
MDP0000131949 Malus domestica MDP0000131949 N 0.000
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.000
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.000
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.000
mgf019910m Mimulus guttatus mgf019910m N 0.000
mgf022319m Mimulus guttatus mgf022319m N 0.000
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.000
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.000
GSMUA_Achr5G26210_001 Musa acuminata GSMUA_Achr5G26210_001 N 0.000
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.000
GSMUA_Achr11G18950_001 Musa acuminata GSMUA_Achr11G18950_001 N 0.000
OBART01G37960 Oryza barthii OBART01G37960 N 0.000
OBART08G19670 Oryza barthii OBART08G19670 N 0.000
OB05G26090 Oryza brachyantha OB05G26090 N 0.000
OB08G26650 Oryza brachyantha OB08G26650 N 0.000
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.000
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.000
ORGLA01G0317700 Oryza glaberrima ORGLA01G0317700 N 0.000
OGLUM05G19360 Oryza glumaepatula OGLUM05G19360 N 0.000
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.000
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.000
OGLUM01G42130 Oryza glumaepatula OGLUM01G42130 N 0.000
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.000
BGIOSGA000452 Oryza indica BGIOSGA000452 N 0.000
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.000
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.000
OMERI01G34920 Oryza meridionalis OMERI01G34920 N 0.000
ONIVA04G25710 Oryza nivara ONIVA04G25710 N 0.000
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.000
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.000
OPUNC01G36780 Oryza punctata OPUNC01G36780 N 0.000
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.000
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.000
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.000
ORUFI01G41290 Oryza rufipogon ORUFI01G41290 N 0.000
OS08G0504000 Oryza sativa OS08G0504000 N 0.000
OS09G0485600 Oryza sativa OS09G0485600 N 0.000
OS01G0859100 Oryza sativa OS01G0859100 N 0.000
Pavir.J11927 Panicum virgatum Pavir.J11927 N 0.000
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.000
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.000
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.000
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.000
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.000
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.000
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.000
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.000
Pm001374 Prunus mume Pm001374 N 0.000
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.000
30055.m001542 Ricinus communis 30055.m001542 N 0.000
30061.m000294 Ricinus communis 30061.m000294 N 0.000
SapurV1A.0111s0170 Salix purpurea SapurV1A.0111s0170 N 0.000
SapurV1A.2210s0020 Salix purpurea SapurV1A.2210s0020 N 0.000
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.000
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.000
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.000
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.000
Si029897m.g Setaria italica Si029897m.g N 0.000
Si022296m.g Setaria italica Si022296m.g N 0.000
Si013819m.g Setaria italica Si013819m.g N 0.000
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.000
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.000
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.000
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.000
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.000
Sb09g021850 Sorghum bicolor Sb09g021850 N 0.000
TCM_041441 Theobroma cacao TCM_041441 N 0.000
TCM_005892 Theobroma cacao TCM_005892 N 0.000
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.000
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.000
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.000
TRAES3BF099700020CFD_g Triticum aestivum TRAES3BF099700020CFD_g N 0.000
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.000
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.000
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.000
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.000
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.000
GRMZM2G000836 Zea mays GRMZM2G000836 N 0.000