Bra013556 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra013556 T205089_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATML1
M02048_2.00
Arabidopsis thaliana
NNHNRHYRNN

NNYRDYNDNN
PBM
Weirauch et al.(2014)
pTH8203
0.865 0.965
ATML1
M10626_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ML1_01
0.865 0.965
PDF2
M06921_2.00
Arabidopsis thaliana
WNVGAATATTCYHTN

NADRGAATATTCBNW
Dap-seq
OMalley et al.(2016)
PDF2_col
0.855 0.965
PDF2
M10625_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PDF2_01
0.855 0.965
PK24181.1
M01252_2.00
Cannabis sativa
NNNNNNNHDH

DHDNNNNNNN
PBM
Lambert et al.(2019)
pTH11300
0.841 0.807
HDG11
M02039_2.00
Arabidopsis thaliana
DCATTWAWKD

HMWTWAATGH
PBM
Weirauch et al.(2014)
pTH7664
0.825 0.789
HDG11
M06904_2.00
Arabidopsis thaliana
DCATTWAWTRH

DYAWTWAATGH
Dap-seq
OMalley et al.(2016)
EDT1_col
0.825 0.789
HDG1
M06917_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_col100_a
0.804 0.754
HDG1
M06918_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_colamp_a
0.804 0.754
HDG9
M10628_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG9_01
0.804 0.702
ANL2
M02046_2.00
Arabidopsis thaliana
NCATTWATKNN

NNMATWAATGN
PBM
Weirauch et al.(2014)
pTH8244
0.786 0.772
ANL2
M06919_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_col_a
0.786 0.772
ANL2
M06920_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_colamp_a
0.786 0.772
HDG7
M06931_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG7_col_a
0.744 0.737
HDG7
M10629_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG7_01
0.744 0.737
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra013556.1-P Homeodomain 58 114

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

617 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AALB005453 Anopheles albimanus AALB005453 N 0.000
AARA008106 Anopheles arabiensis AARA008106 N 0.000
ACHR000913 Anopheles christyi ACHR000913 N 0.000
ACOM025795 Anopheles coluzzii ACOM025795 N 0.000
ADAC004904 Anopheles darlingi ADAC004904 N 0.000
AFUN008636 Anopheles funestus AFUN008636 N 0.000
AGAP007541 Anopheles gambiae AGAP007541 N 0.000
AMEC002331 Anopheles melas AMEC002331 N 0.000
AMEM000737 Anopheles merus AMEM000737 N 0.000
AQUA004386 Anopheles quadriannulatus AQUA004386 N 0.000
ASTEI01448 Anopheles stephensi ASTEI01448 N 0.000
CG10565 Drosophila melanogaster FBgn0037051 N 0.000
CPIJ011412 Culex quinquefasciatus CPIJ011412 N 0.000
CpipJ_CPIJ011412 Culex pipiens CpipJ_CPIJ011412 N 0.000
GA10399 Drosophila pseudoobscura FBgn0070456 N 0.000
GD12143 Drosophila simulans FBgn0183880 N 0.000
GF10188 Drosophila ananassae FBgn0087229 N 0.000
GG13262 Drosophila erecta FBgn0105534 N 0.000
GH17000 Drosophila grimshawi FBgn0124471 N 0.000
GI11414 Drosophila mojavensis FBgn0134175 N 0.000
GJ13609 Drosophila virilis FBgn0200831 N 0.000
GK12316 Drosophila willistoni FBgn0214326 N 0.000
GL20759 Drosophila persimilis FBgn0158354 N 0.000
GM22166 Drosophila sechellia FBgn0177037 N 0.000
LCUP016432 Lucilia cuprina LCUP016432 N 0.000