Bra018155 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra018155 T205113_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.709 0.786
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.709 0.786
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.693 0.786
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.693 0.786
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.611 0.518
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.611 0.518
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.611 0.518
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.607 0.571
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra018155.1-P Homeodomain 118 173

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo12274s010 Brassica oleracea Bo12274s010 I 0.790
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.714
Bo2g012410 Brassica oleracea Bo2g012410 I 0.714
Bo3g010120 Brassica oleracea Bo3g010120 I 0.714
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.714
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.714
Bra023506 Brassica rapa Bra023506 I 0.714
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.714
Bra006285 Brassica rapa Bra006285 I 0.714
HAT7 Arabidopsis thaliana AT5G15150 I 0.714
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.714
TCM_018470 Theobroma cacao TCM_018470 I 0.713
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.713
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.713
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.713
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.713
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.713
29822.m003500 Ricinus communis 29822.m003500 I 0.713
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.713
Cla010510 Citrullus lanatus Cla010510 I 0.713
Bo9g165360 Brassica oleracea Bo9g165360 I 0.713
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.713
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.713
Bra008717 Brassica rapa Bra008717 I 0.713
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.712
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.710
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.710
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.709
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.709
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.709
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.709
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.709
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.709
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.709
Pm015861 Prunus mume Pm015861 I 0.709
PK20392.1 Cannabis sativa PK20392.1 D 0.709
MDP0000737128 Malus domestica MDP0000737128 I 0.709
MDP0000124827 Malus domestica MDP0000124827 I 0.709
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.709
Ca_10527 Cicer arietinum Ca_10527 I 0.709
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.709
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.708
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.698
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.693
Bra039135 Brassica rapa Bra039135 I 0.693
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.693
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.693
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.693
Bo1g158730 Brassica oleracea Bo1g158730 I 0.693
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.692
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.689
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.688
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.688
Ca_20151 Cicer arietinum Ca_20151 I 0.687
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.676
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.675
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.670
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.664
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.658
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.658
Bra022687 Brassica rapa Bra022687 I 0.635
Bo2g042250 Brassica oleracea Bo2g042250 I 0.635
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.631
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.631
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.626
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.626
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.626
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.620
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.620
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.620
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.620
mgf022748m Mimulus guttatus mgf022748m I 0.620
mgf019824m Mimulus guttatus mgf019824m I 0.620
Cla018017 Citrullus lanatus Cla018017 I 0.620
Pm011328 Prunus mume Pm011328 I 0.615
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.615
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.613
MDP0000909160 Malus domestica MDP0000909160 I 0.613
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.613
TCM_031644 Theobroma cacao TCM_031644 I 0.612
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.612
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.612
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.612
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.612
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.612
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.612
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.612
Bo3g002560 Brassica oleracea Bo3g002560 I 0.611
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.611
Bo2g005230 Brassica oleracea Bo2g005230 I 0.611
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.611
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.611
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.611
Cla018641 Citrullus lanatus Cla018641 I 0.611
Bo9g181720 Brassica oleracea Bo9g181720 I 0.611
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.611
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.611
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.611
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.611
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.611
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.611
Bra028820 Brassica rapa Bra028820 I 0.611
Bra009510 Brassica rapa Bra009510 I 0.611
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.611
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.610
MDP0000146339 Malus domestica MDP0000146339 I 0.608
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.607
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.605
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.602