Bra024377 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra024377 T205135_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND

HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.835 0.965
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN

NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.835 0.965
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV

BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.835 0.965
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG

CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.835 0.965
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD

HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.815 0.807
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW

WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.815 0.807
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT

AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.813 0.877
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN

NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.809 0.895
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR

YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.809 0.895
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN

NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.809 0.895
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN

NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.807 0.807
HAT5
M06914_2.00
Arabidopsis thaliana
NHAATAATTDW

WHAATTATTDN
Dap-seq
OMalley et al.(2016)
HAT5_col_a
0.796 0.772
HAT5
M06915_2.00
Arabidopsis thaliana
WNYAATAATTRWDN

NHWYAATTATTRNW
Dap-seq
OMalley et al.(2016)
HAT5_colamp_a
0.796 0.772
HAT5
M02683_2.00
Arabidopsis thaliana
SCAATAATTNNV

BNNAATTATTGS
SELEX
Mathelier et al.(2014)
MA0008.2
0.796 0.772
HAT5
M10624_2.00
Arabidopsis thaliana
YSCAATAATTNNVN

NBNNAATTATTGSR
Transfac
Matys et al.(2006)
P$ATHB1_01
0.796 0.772
ATHB-21
M06907_2.00
Arabidopsis thaliana
NNWHCAATWATTDN

NHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB21_col_a
0.717 0.684
ATHB-21
M06908_2.00
Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN

NNAHCAATWATTDNNNHHWW
Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a
0.717 0.684
HB-5
M06924_2.00
Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH

DWWDNNNHMAATWATTGDTNN
Dap-seq
OMalley et al.(2016)
ATHB40_col_a
0.716 0.632
HB-5
M06925_2.00
Arabidopsis thaliana
HHAATWATTGDWNN

NNWHCAATWATTDD
Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a
0.716 0.632
ATHB-53
M06934_2.00
Arabidopsis thaliana
HMAATAATTRD

HYAATTATTKD
Dap-seq
OMalley et al.(2016)
ATHB53_col_a
0.712 0.614
ATHB-53
M06935_2.00
Arabidopsis thaliana
NNWHCAATWATTDDN

NHHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a
0.712 0.614
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.677 0.789
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.677 0.789
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.656 0.772
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.656 0.772
ATHB-7
M02043_2.00
Arabidopsis thaliana
NHWTGATTGN

NCAATCAWDN
PBM
Weirauch et al.(2014)
pTH8090
0.613 0.649
ATHB-7
M06911_2.00
Arabidopsis thaliana
NHYCAATCATTSW

WSAATGATTGRDN
Dap-seq
OMalley et al.(2016)
ATHB7_col_a
0.613 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra024377.1-P Homeodomain 69 125

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

815 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
estExt_Genewise1.C_40222 Cryphonectria parasitica estExt_Genewise1.C_40222 N 0.000
SAPIO_CDS7458 Scedosporium apiospermum SAPIO_CDS7458 N 0.000
S40288_03133 Stachybotrys chartarum S40288_03133 N 0.000
PODANS_1_17550 Podospora anserina PODANS_1_17550 N 0.000
PFICI_10667 Pestalotiopsis fici PFICI_10667 N 0.000
OIDMADRAFT_62375 Oidiodendron maius OIDMADRAFT_62375 N 0.000
OIDMADRAFT_62312 Oidiodendron maius OIDMADRAFT_62312 N 0.000
OIDMADRAFT_174720 Oidiodendron maius OIDMADRAFT_174720 N 0.000
NEUTE1DRAFT_89140 Neurospora tetrasperma NEUTE1DRAFT_89140 N 0.000
SMAC_05040 Sordaria macrospora SMAC_05040 N 0.000
THITE_2111974 Thielavia terrestris THITE_2111974 N 0.000
TRIATDRAFT_127907 Trichoderma atroviride TRIATDRAFT_127907 N 0.000
NCU02142 Neurospora crassa NCU02142 N 0.000
estExt_fgenesh3_kg.C_20127 Neurospora discreta estExt_fgenesh3_kg.C_20127 N 0.000
X797_006320 Metarhizium robertsii X797_006320 N 0.000
VHEMI02872 Torrubiella hemipterigena VHEMI02872 N 0.000
V499_03539 Pseudogymnoascus pannorum V499_03539 N 0.000
V499_02967 Pseudogymnoascus pannorum V499_02967 N 0.000
UV8b_1816 Ustilaginoidea virens UV8b_1816 N 0.000
TRIREDRAFT_122523 Trichoderma reesei TRIREDRAFT_122523 N 0.000
MYCTH_2313964 Myceliophthora thermophila MYCTH_2313964 N 0.000
MGU_03571 Metarhizium guizhouense MGU_03571 N 0.000
MGG_03711 Magnaporthe oryzae MGG_03711 N 0.000
Cob_05014 Colletotrichum orbiculare Cob_05014 N 0.000
CMQ_3062 Grosmannia clavigera CMQ_3062 N 0.000
CHGG_06395 Chaetomium globosum CHGG_06395 N 0.000
CH063_06178 Colletotrichum higginsianum CH063_06178 N 0.000
CGGC5_5314 Colletotrichum gloeosporioides CGGC5_5314 N 0.000
CFIO01_12453 Colletotrichum fioriniae CFIO01_12453 N 0.000
CCM_03378 Cordyceps militaris CCM_03378 N 0.000
BBA_09641 Beauveria bassiana BBA_09641 N 0.000
CPUR_05147 Claviceps purpurea CPUR_05147 N 0.000
F503_02282 Ophiostoma piceae uamh F503_02282 N 0.000
FFUJ_06005 Fusarium fujikuroi FFUJ_06005 N 0.000
MBR_08021 Metarhizium brunneum MBR_08021 N 0.000
MBM_01057 Marssonina brunnea MBM_01057 N 0.000
MAJ_03898 Metarhizium majus MAJ_03898 N 0.000
HMPREF1624_04956 Sporothrix schenckii HMPREF1624_04956 N 0.000
GMDG_07896 Pseudogymnoascus destructans GMDG_07896 N 0.000
GLRG_02520 Colletotrichum graminicola GLRG_02520 N 0.000
GGTG_00991 Gaeumannomyces graminis GGTG_00991 N 0.000
FOXG_08872 Fusarium oxysporum FOXG_08872 N 0.000
ACRE_026230 Acremonium chrysogenum ACRE_026230 N 0.000