Bra028295 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra028295 T205153_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HDG7
M06931_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG7_col_a
0.658 0.895
HDG7
M10629_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG7_01
0.658 0.895
ANL2
M02046_2.00
Arabidopsis thaliana
NCATTWATKNN

NNMATWAATGN
PBM
Weirauch et al.(2014)
pTH8244
0.612 0.719
ANL2
M06919_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_col_a
0.612 0.719
ANL2
M06920_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_colamp_a
0.612 0.719
HDG1
M06917_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_col100_a
0.607 0.649
HDG1
M06918_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_colamp_a
0.607 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra028295.1-P Homeodomain 40 96

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_14988 Aegilops tauschii F775_14988 I 0.614
AMTR_s00069p00091460 Amborella trichopoda AMTR_s00069p00091460 I 0.632
AMTR_s00040p00231210 Amborella trichopoda AMTR_s00040p00231210 I 0.632
Aquca_013_00387 Aquilegia coerulea Aquca_013_00387 I 0.632
HDG1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5002090 I 0.607
ANL2 Arabidopsis thaliana AT4G00730 D 0.612
HDG1 Arabidopsis thaliana AT3G61150 D 0.607
HDG7 Arabidopsis thaliana AT5G52170 D 0.658
Bostr.25993s0196 Boechera stricta Bostr.25993s0196 I 0.632
Bostr.13158s0105 Boechera stricta Bostr.13158s0105 I 0.607
Bostr.10064s0036 Boechera stricta Bostr.10064s0036 I 0.612
BRADI3G51540 Brachypodium distachyon BRADI3G51540 I 0.614
BRADI4G35760 Brachypodium distachyon BRADI4G35760 I 0.632
Bo9g104880 Brassica oleracea Bo9g104880 I 0.846
Bo9g002480 Brassica oleracea Bo9g002480 I 0.612
Bo6g077480 Brassica oleracea Bo6g077480 I 0.607
Bo3g054630 Brassica oleracea Bo3g054630 I 0.612
Bo4g024940 Brassica oleracea Bo4g024940 I 0.612
Bra037355 Brassica rapa Bra037355 I 0.612
Bra021363 Brassica rapa Bra021363 N 0.674
Bra003439 Brassica rapa Bra003439 I 0.607
Bra004934 Brassica rapa Bra004934 I 0.612
PK08504.1 Cannabis sativa PK08504.1 I 0.612
PK00670.1 Cannabis sativa PK00670.1 I 0.622
Cagra.0050s0122 Capsella grandiflora Cagra.0050s0122 I 0.632
Cagra.6594s0010 Capsella grandiflora Cagra.6594s0010 I 0.612
Cagra.3373s0039 Capsella grandiflora Cagra.3373s0039 I 0.607
Cagra.0094s0026 Capsella grandiflora Cagra.0094s0026 I 0.662
Carubv10000257m.g Capsella rubella Carubv10000257m.g I 0.612
Carubv10028346m.g Capsella rubella Carubv10028346m.g I 0.662
Carubv10022677m.g Capsella rubella Carubv10022677m.g I 0.632
Carubv10016704m.g Capsella rubella Carubv10016704m.g I 0.607
evm.TU.supercontig_18.215 Carica papaya evm.TU.supercontig_18.215 I 0.612
evm.TU.supercontig_107.25 Carica papaya evm.TU.supercontig_107.25 I 0.620
Ca_19784 Cicer arietinum Ca_19784 I 0.620
Ca_16386 Cicer arietinum Ca_16386 I 0.612
Ca_11891 Cicer arietinum Ca_11891 I 0.694
Ca_06267 Cicer arietinum Ca_06267 I 0.612
Ca_04491 Cicer arietinum Ca_04491 I 0.612
Cla006300 Citrullus lanatus Cla006300 I 0.610
Cla007037 Citrullus lanatus Cla007037 I 0.612
Cla021581 Citrullus lanatus Cla021581 I 0.614
Ciclev10024950m.g Citrus clementina Ciclev10024950m.g I 0.603
Ciclev10018855m.g Citrus clementina Ciclev10018855m.g I 0.612
orange1.1g002869m.g Citrus sinensis orange1.1g002869m.g I 0.612
orange1.1g003954m.g Citrus sinensis orange1.1g003954m.g I 0.641
orange1.1g004271m.g Citrus sinensis orange1.1g004271m.g I 0.603
Cucsa.363170 Cucumis sativus Cucsa.363170 I 0.612
Cucsa.250870 Cucumis sativus Cucsa.250870 I 0.610
Eucgr.K00234 Eucalyptus grandis Eucgr.K00234 I 0.641
Eucgr.D02248 Eucalyptus grandis Eucgr.D02248 I 0.612
Thhalv10001317m.g Eutrema salsugineum Thhalv10001317m.g I 0.631
Thhalv10015677m.g Eutrema salsugineum Thhalv10015677m.g I 0.662
Thhalv10028440m.g Eutrema salsugineum Thhalv10028440m.g I 0.612
Thhalv10005786m.g Eutrema salsugineum Thhalv10005786m.g I 0.607
gene13306-v1.0-hybrid Fragaria vesca gene13306-v1.0-hybrid I 0.620
gene19130-v1.0-hybrid Fragaria vesca gene19130-v1.0-hybrid I 0.612
GLYMA09G40130 Glycine max GLYMA09G40130 I 0.612
GLYMA07G08340 Glycine max GLYMA07G08340 I 0.612
GLYMA03G01860 Glycine max GLYMA03G01860 I 0.612
GLYMA20G29580 Glycine max GLYMA20G29580 I 0.612
GLYMA09G26600 Glycine max GLYMA09G26600 I 0.620
GLYMA01G45070 Glycine max GLYMA01G45070 I 0.729
GLYMA10G38280 Glycine max GLYMA10G38280 I 0.612
GLYMA11G00570 Glycine max GLYMA11G00570 I 0.729
GLYMA16G32130 Glycine max GLYMA16G32130 I 0.620
GLYMA18G45970 Glycine max GLYMA18G45970 I 0.612
GLYMA09G02990 Glycine max GLYMA09G02990 N 0.666
Gorai.007G096000 Gossypium raimondii Gorai.007G096000 I 0.612
Gorai.004G120700 Gossypium raimondii Gorai.004G120700 I 0.620
Gorai.008G117200 Gossypium raimondii Gorai.008G117200 I 0.612
Gorai.001G171000 Gossypium raimondii Gorai.001G171000 I 0.612
MLOC_61420 Hordeum vulgare MLOC_61420 I 0.614
LPERR02G22520 Leersia perrieri LPERR02G22520 I 0.614
LPERR09G13080 Leersia perrieri LPERR09G13080 I 0.632
Lus10036567.g Linum usitatissimum Lus10036567.g I 0.612
Lus10027437.g Linum usitatissimum Lus10027437.g I 0.614
Lus10005759.g Linum usitatissimum Lus10005759.g I 0.614
Lus10041362.g Linum usitatissimum Lus10041362.g I 0.612
LjSGA_016003.1 Lotus japonicus LjSGA_016003.1 I 0.612
MDP0000285637 Malus domestica MDP0000285637 I 0.612
MDP0000491277 Malus domestica MDP0000491277 I 0.612
cassava23105.valid.m1 Manihot esculenta cassava23105.valid.m1 I 0.641
cassava25087.valid.m1 Manihot esculenta cassava25087.valid.m1 I 0.612
cassava21275.m1 Manihot esculenta cassava21275.m1 I 0.620
cassava36876.valid.m1 Manihot esculenta cassava36876.valid.m1 I 0.612
MTR_1g101280 Medicago truncatula MTR_1g101280 I 0.612
MTR_0198s0030 Medicago truncatula MTR_0198s0030 I 0.632
MTR_5g005600 Medicago truncatula MTR_5g005600 N 0.632
MTR_7g076080 Medicago truncatula MTR_7g076080 I 0.612
MTR_8g432540 Medicago truncatula MTR_8g432540 I 0.612
mgf025522m Mimulus guttatus mgf025522m I 0.614
mgf015456m Mimulus guttatus mgf015456m I 0.622
mgf010371m Mimulus guttatus mgf010371m I 0.614
GSMUA_Achr5G10510_001 Musa acuminata GSMUA_Achr5G10510_001 I 0.614
GSMUA_Achr5G20050_001 Musa acuminata GSMUA_Achr5G20050_001 I 0.612
GSMUA_AchrUn_randomG10540_001 Musa acuminata GSMUA_AchrUn_randomG10540_001 I 0.612
GSMUA_Achr1G18760_001 Musa acuminata GSMUA_Achr1G18760_001 I 0.612
OBART09G17090 Oryza barthii OBART09G17090 I 0.632
OBART02G27630 Oryza barthii OBART02G27630 I 0.614
OB09G23660 Oryza brachyantha OB09G23660 I 0.610
OB02G35000 Oryza brachyantha OB02G35000 I 0.614
ORGLA02G0238300 Oryza glaberrima ORGLA02G0238300 I 0.614
OGLUM02G28170 Oryza glumaepatula OGLUM02G28170 I 0.614
OGLUM09G17630 Oryza glumaepatula OGLUM09G17630 I 0.632
BGIOSGA005852 Oryza indica BGIOSGA005852 I 0.614
BGIOSGA029405 Oryza indica BGIOSGA029405 I 0.632
OLONG_000360 Oryza longistaminata OLONG_000360 I 0.614
OMERI02G26880 Oryza meridionalis OMERI02G26880 I 0.614
OMERI09G12650 Oryza meridionalis OMERI09G12650 I 0.632
ONIVA09G18120 Oryza nivara ONIVA09G18120 I 0.632
ONIVA02G30520 Oryza nivara ONIVA02G30520 I 0.614
OPUNC09G15430 Oryza punctata OPUNC09G15430 I 0.632
OPUNC02G25360 Oryza punctata OPUNC02G25360 I 0.614
ORUFI09G18410 Oryza rufipogon ORUFI09G18410 I 0.632
ORUFI02G29080 Oryza rufipogon ORUFI02G29080 I 0.614
ROC5 Oryza sativa OS02G0674800 I 0.614
OS09G0526300 Oryza sativa OS09G0526300 I 0.610
Pavir.Ba01266 Panicum virgatum Pavir.Ba01266 I 0.632
Pavir.Eb00587 Panicum virgatum Pavir.Eb00587 I 0.612
Pavir.J04827 Panicum virgatum Pavir.J04827 I 0.632
POPTR_0015s13340 Populus trichocarpa POPTR_0015s13340 I 0.641
POPTR_0002s15610 Populus trichocarpa POPTR_0002s15610 I 0.612
POPTR_0014s07130 Populus trichocarpa POPTR_0014s07130 I 0.612
POPTR_0012s13390 Populus trichocarpa POPTR_0012s13390 I 0.641
Pm017987 Prunus mume Pm017987 I 0.612
Pm019365 Prunus mume Pm019365 I 0.622
PRUPE_ppa001436mg Prunus persica PRUPE_ppa001436mg I 0.612
PRUPE_ppa001894mg Prunus persica PRUPE_ppa001894mg I 0.622
30174.m008969 Ricinus communis 30174.m008969 I 0.612
30147.m014288 Ricinus communis 30147.m014288 I 0.641
SapurV1A.0024s0300 Salix purpurea SapurV1A.0024s0300 I 0.612
SapurV1A.0586s0110 Salix purpurea SapurV1A.0586s0110 I 0.612
SapurV1A.0665s0060 Salix purpurea SapurV1A.0665s0060 I 0.643
SapurV1A.0068s0140 Salix purpurea SapurV1A.0068s0140 I 0.641
Si000344m.g Setaria italica Si000344m.g I 0.612
Si028908m.g Setaria italica Si028908m.g I 0.632
Solyc01g091630.2 Solanum lycopersicum Solyc01g091630.2 I 0.614
Solyc03g026070.2 Solanum lycopersicum Solyc03g026070.2 I 0.642
Solyc09g066030.1 Solanum lycopersicum Solyc09g066030.1 I 0.603
PGSC0003DMG400014279 Solanum tuberosum PGSC0003DMG400014279 I 0.642
PGSC0003DMG400027770 Solanum tuberosum PGSC0003DMG400027770 I 0.614
PGSC0003DMG400007733 Solanum tuberosum PGSC0003DMG400007733 I 0.612
Sb02g030470 Sorghum bicolor Sb02g030470 I 0.632
Sb03g008090 Sorghum bicolor Sb03g008090 I 0.612
TCM_005412 Theobroma cacao TCM_005412 I 0.612
TCM_015114 Theobroma cacao TCM_015114 I 0.641
Traes_5BL_BCAA67AC6 Triticum aestivum Traes_5BL_BCAA67AC6 I 0.632
TRIUR3_30780 Triticum urartu TRIUR3_30780 I 0.632
VIT_04s0079g00480 Vitis vinifera VIT_04s0079g00480 I 0.608
VIT_15s0048g02000 Vitis vinifera VIT_15s0048g02000 I 0.614
VIT_16s0100g00670 Vitis vinifera VIT_16s0100g00670 I 0.608
GRMZM2G116658 Zea mays GRMZM2G116658 I 0.632
GRMZM2G026643 Zea mays GRMZM2G026643 I 0.612