Bra033725 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra033725 T205171_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RLT1
M02038_2.00
Arabidopsis thaliana
NDHTCWWN

NWWGADHN
PBM
Weirauch et al.(2014)
pTH5432
0.667 0.702
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra033725.1-P Homeodomain 23 79

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo7g067190 Brassica oleracea Bo7g067190 I 0.865
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.858
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.858
29983.m003128 Ricinus communis 29983.m003128 I 0.853
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.853
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.853
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.853
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.853
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.853
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.853
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.852
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.852
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.852
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.852
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.852
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.841
RLT2 Arabidopsis thaliana AT5G44180 I 0.836
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.826
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.826
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.824
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.821
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.821
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.821
TCM_008214 Theobroma cacao TCM_008214 I 0.821
Ca_11272 Cicer arietinum Ca_11272 I 0.816
PK06068.1 Cannabis sativa PK06068.1 I 0.813
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.809
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.809
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.773
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.773
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.773
Lus10017688.g Linum usitatissimum Lus10017688.g N 0.764
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.756
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.755
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.754
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.754
Bo3g143570 Brassica oleracea Bo3g143570 I 0.701
Bra010869 Brassica rapa Bra010869 I 0.701
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.690
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.688
MTR_4g078860 Medicago truncatula MTR_4g078860 N 0.683
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.680
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.673
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.671
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.671
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.671
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.671
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.671
OBART05G25730 Oryza barthii OBART05G25730 I 0.671
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.671
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.671
MDP0000207866 Malus domestica MDP0000207866 I 0.669
Cla008712 Citrullus lanatus Cla008712 I 0.669
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.668
PDK_20s1402391g002 Phoenix dactylifera PDK_20s1402391g002 I 0.668
Bra032908 Brassica rapa Bra032908 I 0.668
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.668
Bo5g055970 Brassica oleracea Bo5g055970 I 0.668
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.668
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.667
RLT1 Arabidopsis thaliana AT1G28420 D 0.667
Pm010098 Prunus mume Pm010098 I 0.667
Cla009803 Citrullus lanatus Cla009803 I 0.667
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.667
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.667
MDP0000192108 Malus domestica MDP0000192108 I 0.667
MDP0000288192 Malus domestica MDP0000288192 I 0.667
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.667
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.667
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.667
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.667
Ca_00337 Cicer arietinum Ca_00337 I 0.667
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.667
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.667
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.667
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.667
Ca_06343 Cicer arietinum Ca_06343 I 0.667
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.667
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.667
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.667
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.667
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.667
PK13272.1 Cannabis sativa PK13272.1 I 0.667
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.665
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.659
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.658
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.657
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.657
Ca_21400 Cicer arietinum Ca_21400 I 0.657
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.657
MTR_5g089870 Medicago truncatula MTR_5g089870 N 0.653
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.651
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.651
TCM_029805 Theobroma cacao TCM_029805 I 0.651
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.649
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.649
Si020949m.g Setaria italica Si020949m.g I 0.647
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.647
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.647
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.645
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.645
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.643
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.643
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.641
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.640
mgf006858m Mimulus guttatus mgf006858m I 0.635
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.633
F775_01844 Aegilops tauschii F775_01844 I 0.633
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.633
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.633
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.633
Si004333m.g Setaria italica Si004333m.g I 0.629
OS01G0672201 Oryza sativa OS01G0672201 I 0.629
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.629
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.629
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.629
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.629
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.629
OB01G35240 Oryza brachyantha OB01G35240 I 0.629
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.629
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.629
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.629
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.629
mgf006635m Mimulus guttatus mgf006635m I 0.619
30190.m011307 Ricinus communis 30190.m011307 I 0.615
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.606
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.606
Thhalv10028592m.g Eutrema salsugineum Thhalv10028592m.g I 0.606
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.606
Bo9g006450 Brassica oleracea Bo9g006450 I 0.602
Bra034196 Brassica rapa Bra034196 I 0.602