Bra038757 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra038757 T205187_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.632 0.965
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.632 0.965
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.622 0.965
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.622 0.965
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.608 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra038757.1-P Homeodomain 63 119

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.3519s0026 Capsella grandiflora Cagra.3519s0026 I 0.633
Bo7g107550 Brassica oleracea Bo7g107550 I 0.633
Bra013556 Brassica rapa Bra013556 I 0.633
Carubv10006895m.g Capsella rubella Carubv10006895m.g I 0.633
Bra020872 Brassica rapa Bra020872 I 0.633
Bo1g025510 Brassica oleracea Bo1g025510 I 0.633
Bo3g163910 Brassica oleracea Bo3g163910 I 0.633
TCM_030175 Theobroma cacao TCM_030175 I 0.632
Lus10020059.g Linum usitatissimum Lus10020059.g I 0.632
POPTR_0004s01980 Populus trichocarpa POPTR_0004s01980 I 0.632
Lus10006765.g Linum usitatissimum Lus10006765.g I 0.632
Thhalv10024488m.g Eutrema salsugineum Thhalv10024488m.g I 0.632
OLONG_026649 Oryza longistaminata OLONG_026649 I 0.632
Bostr.10689s0126 Boechera stricta Bostr.10689s0126 I 0.632
29842.m003633 Ricinus communis 29842.m003633 I 0.632
VIT_10s0116g00680 Vitis vinifera VIT_10s0116g00680 I 0.632
SapurV1A.0722s0230 Salix purpurea SapurV1A.0722s0230 I 0.632
cassava26453.m1 Manihot esculenta cassava26453.m1 I 0.632
evm.TU.supercontig_198.17 Carica papaya evm.TU.supercontig_198.17 I 0.632
ATML1 Arabidopsis thaliana AT4G21750 D 0.632
POPTR_0011s00520 Populus trichocarpa POPTR_0011s00520 I 0.631
Lus10018360.g Linum usitatissimum Lus10018360.g I 0.630
Gorai.010G177800 Gossypium raimondii Gorai.010G177800 I 0.630
Lus10007650.g Linum usitatissimum Lus10007650.g I 0.630
Bostr.2983s0029 Boechera stricta Bostr.2983s0029 I 0.622
Carubv10000300m.g Capsella rubella Carubv10000300m.g I 0.622
Cagra.5070s0005 Capsella grandiflora Cagra.5070s0005 I 0.622
PDF2 Arabidopsis thaliana AT4G04890 D 0.622
Bra000807 Brassica rapa Bra000807 I 0.620
Bo3g048340 Brassica oleracea Bo3g048340 I 0.620
Bra029527 Brassica rapa Bra029527 I 0.620
Bo9g077670 Brassica oleracea Bo9g077670 I 0.620
Thhalv10028459m.g Eutrema salsugineum Thhalv10028459m.g I 0.620
PGSC0003DMG400024068 Solanum tuberosum PGSC0003DMG400024068 I 0.618
POPTR_0003s09470 Populus trichocarpa POPTR_0003s09470 I 0.617
PRUPE_ppa014792mg Prunus persica PRUPE_ppa014792mg I 0.617
TCM_016582 Theobroma cacao TCM_016582 I 0.617
Sb01g028160 Sorghum bicolor Sb01g028160 I 0.617
POPTR_0001s02030 Populus trichocarpa POPTR_0001s02030 I 0.617
Thhalv10000776m.g Eutrema salsugineum Thhalv10000776m.g I 0.617
ORUFI10G20730 Oryza rufipogon ORUFI10G20730 I 0.617
ONIVA10G22060 Oryza nivara ONIVA10G22060 I 0.617
OMERI10G15290 Oryza meridionalis OMERI10G15290 I 0.617
OLONG_018774 Oryza longistaminata OLONG_018774 I 0.617
OPUNC10G17890 Oryza punctata OPUNC10G17890 I 0.617
OPUNC10G17920 Oryza punctata OPUNC10G17920 I 0.617
SapurV1A.0063s0030 Salix purpurea SapurV1A.0063s0030 I 0.617
ORGLA10G0146400 Oryza glaberrima ORGLA10G0146400 I 0.617
ROC3 Oryza sativa OS10G0575600 I 0.617
SapurV1A.0051s0090 Salix purpurea SapurV1A.0051s0090 I 0.617
OGLUM10G19540 Oryza glumaepatula OGLUM10G19540 I 0.617
Cagra.0751s0009 Capsella grandiflora Cagra.0751s0009 I 0.617
MDP0000123097 Malus domestica MDP0000123097 I 0.617
Gorai.003G184900 Gossypium raimondii Gorai.003G184900 I 0.617
Carubv10028088m.g Capsella rubella Carubv10028088m.g I 0.617
Eucgr.D02223 Eucalyptus grandis Eucgr.D02223 I 0.617
Ciclev10003996m.g Citrus clementina Ciclev10003996m.g I 0.617
Bostr.28243s0044 Boechera stricta Bostr.28243s0044 I 0.617
Pavir.Ib03079 Panicum virgatum Pavir.Ib03079 I 0.617
Pm023161 Prunus mume Pm023161 I 0.617
Cla016492 Citrullus lanatus Cla016492 I 0.617
VIT_02s0012g02030 Vitis vinifera VIT_02s0012g02030 I 0.617
Pavir.J05371 Panicum virgatum Pavir.J05371 I 0.617
cassava44056.valid.m1 Manihot esculenta cassava44056.valid.m1 I 0.617
mgf002757m Mimulus guttatus mgf002757m I 0.617
Cucsa.312880 Cucumis sativus Cucsa.312880 I 0.617
TRIUR3_19363 Triticum urartu TRIUR3_19363 I 0.617
Si034202m.g Setaria italica Si034202m.g I 0.617
GLYMA01G01850 Glycine max GLYMA01G01850 I 0.617
MLOC_52077 Hordeum vulgare MLOC_52077 I 0.617
F775_15827 Aegilops tauschii F775_15827 I 0.617
Bra017519 Brassica rapa Bra017519 I 0.617
GRMZM2G123140 Zea mays GRMZM2G123140 I 0.617
Bo9g066790 Brassica oleracea Bo9g066790 I 0.617
OB10G26620 Oryza brachyantha OB10G26620 I 0.617
BGIOSGA031343 Oryza indica BGIOSGA031343 I 0.617
BRADI3G34410 Brachypodium distachyon BRADI3G34410 I 0.617
GLYMA09G34061 Glycine max GLYMA09G34061 I 0.617
LPERR10G15330 Leersia perrieri LPERR10G15330 I 0.617
HDG5 Arabidopsis thaliana AT5G46880 I 0.617
OBART10G19440 Oryza barthii OBART10G19440 I 0.617
Gorai.003G185000 Gossypium raimondii Gorai.003G185000 I 0.613
Bo01466s010 Brassica oleracea Bo01466s010 I 0.613
Bra024984 Brassica rapa Bra024984 I 0.612
Cucsa.148430 Cucumis sativus Cucsa.148430 I 0.611
HDG2 Arabidopsis thaliana AT1G05230 I 0.611
Cla007796 Citrullus lanatus Cla007796 I 0.611
MDP0000318514 Malus domestica MDP0000318514 I 0.610
Lus10039667.g Linum usitatissimum Lus10039667.g I 0.610
Ca_07131 Cicer arietinum Ca_07131 I 0.610
GRMZM2G130442 Zea mays GRMZM2G130442 I 0.610
Traes_2AL_48B239DD6 Triticum aestivum Traes_2AL_48B239DD6 I 0.610
Pavir.Fb00210 Panicum virgatum Pavir.Fb00210 I 0.610
Pavir.Gb00438 Panicum virgatum Pavir.Gb00438 I 0.610
Bo5g005350 Brassica oleracea Bo5g005350 I 0.610
Traes_2BL_1F5DBD5D5 Triticum aestivum Traes_2BL_1F5DBD5D5 I 0.610
Traes_2DL_95721ADDA Triticum aestivum Traes_2DL_95721ADDA I 0.610
HDG2 Vitis vinifera VIT_12s0059g02310 I 0.610
orange1.1g004294m.g Citrus sinensis orange1.1g004294m.g I 0.610
Cla010659 Citrullus lanatus Cla010659 I 0.610
MDP0000389745 Malus domestica MDP0000389745 I 0.610
Pm015192 Prunus mume Pm015192 I 0.610
Bra032478 Brassica rapa Bra032478 I 0.610
GLYMA12G32050 Glycine max GLYMA12G32050 I 0.610
GLYMA13G38430 Glycine max GLYMA13G38430 I 0.610
evm.TU.supercontig_8.223 Carica papaya evm.TU.supercontig_8.223 I 0.610
Ciclev10014373m.g Citrus clementina Ciclev10014373m.g I 0.610
BRADI3G15327 Brachypodium distachyon BRADI3G15327 I 0.610
Bostr.25219s0446 Boechera stricta Bostr.25219s0446 I 0.610
GLYMA12G10710 Glycine max GLYMA12G10710 I 0.610
Aquca_047_00083 Aquilegia coerulea Aquca_047_00083 I 0.610
Cucsa.072780 Cucumis sativus Cucsa.072780 I 0.610
OGLUM04G26010 Oryza glumaepatula OGLUM04G26010 I 0.610
Bra015401 Brassica rapa Bra015401 I 0.610
Pavir.J09537 Panicum virgatum Pavir.J09537 I 0.610
Bo8g115250 Brassica oleracea Bo8g115250 I 0.610
Lus10027175.g Linum usitatissimum Lus10027175.g I 0.610
29600.m000538 Ricinus communis 29600.m000538 I 0.610
GRMZM2G004957 Zea mays GRMZM2G004957 I 0.610
GLYMA06G46000 Glycine max GLYMA06G46000 I 0.610
cassava12566.valid.m1 Manihot esculenta cassava12566.valid.m1 I 0.610
Cagra.1671s0144 Capsella grandiflora Cagra.1671s0144 I 0.610
GRMZM2G122897 Zea mays GRMZM2G122897 I 0.610
Si013279m.g Setaria italica Si013279m.g I 0.610
ORGLA08G0016400 Oryza glaberrima ORGLA08G0016400 I 0.610
ORGLA04G0231200 Oryza glaberrima ORGLA04G0231200 I 0.610
OB04G32930 Oryza brachyantha OB04G32930 I 0.610
OB08G12470 Oryza brachyantha OB08G12470 I 0.610
ORGLA08G0042800 Oryza glaberrima ORGLA08G0042800 I 0.610
LjSGA_029418.1 Lotus japonicus LjSGA_029418.1 I 0.610
OS08G0136100 Oryza sativa OS08G0136100 I 0.610
LjSGA_004176.2 Lotus japonicus LjSGA_004176.2 I 0.610
ORUFI08G02510 Oryza rufipogon ORUFI08G02510 I 0.610
ORUFI04G27800 Oryza rufipogon ORUFI04G27800 I 0.610
OPUNC08G02090 Oryza punctata OPUNC08G02090 I 0.610
OPUNC04G23630 Oryza punctata OPUNC04G23630 I 0.610
OLONG_020222 Oryza longistaminata OLONG_020222 I 0.610
OBART08G02270 Oryza barthii OBART08G02270 I 0.610
OLONG_001685 Oryza longistaminata OLONG_001685 I 0.610
OGLUM08G02240 Oryza glumaepatula OGLUM08G02240 I 0.610
OBART04G26630 Oryza barthii OBART04G26630 I 0.610
OMERI08G02310 Oryza meridionalis OMERI08G02310 I 0.610
OB08G15090 Oryza brachyantha OB08G15090 I 0.610
ONIVA08G02450 Oryza nivara ONIVA08G02450 I 0.610
ONIVA04G25060 Oryza nivara ONIVA04G25060 I 0.610
OS08G0187500 Oryza sativa OS08G0187500 I 0.610
MTR_2g088470 Medicago truncatula MTR_2g088470 I 0.610
F775_52393 Aegilops tauschii F775_52393 I 0.610
Sb07g005180 Sorghum bicolor Sb07g005180 I 0.610
Sb07g002780 Sorghum bicolor Sb07g002780 I 0.610
Sb06g029270 Sorghum bicolor Sb06g029270 I 0.610
SapurV1A.0402s0050 Salix purpurea SapurV1A.0402s0050 I 0.610
BGIOSGA027698 Oryza indica BGIOSGA027698 I 0.610
Carubv10008621m.g Capsella rubella Carubv10008621m.g I 0.610
Pavir.J39995 Panicum virgatum Pavir.J39995 I 0.610
Si013285m.g Setaria italica Si013285m.g I 0.610
Si009409m.g Setaria italica Si009409m.g I 0.610
BGIOSGA014307 Oryza indica BGIOSGA014307 I 0.610
SapurV1A.1440s0010 Salix purpurea SapurV1A.1440s0010 I 0.610
LPERR08G02370 Leersia perrieri LPERR08G02370 I 0.610
POPTR_0002s23080 Populus trichocarpa POPTR_0002s23080 I 0.610
MLOC_65829 Hordeum vulgare MLOC_65829 I 0.610
PK16243.1 Cannabis sativa PK16243.1 I 0.610
POPTR_0014s15010 Populus trichocarpa POPTR_0014s15010 I 0.610
Thhalv10006934m.g Eutrema salsugineum Thhalv10006934m.g I 0.610
PRUPE_ppa019198mg Prunus persica PRUPE_ppa019198mg I 0.610
BGIOSGA014304 Oryza indica BGIOSGA014304 I 0.610
LPERR04G21690 Leersia perrieri LPERR04G21690 I 0.610
Pavir.J18262 Panicum virgatum Pavir.J18262 I 0.610
Pavir.J34398 Panicum virgatum Pavir.J34398 I 0.608
PK24181.1 Cannabis sativa PK24181.1 D 0.608
SapurV1A.0649s0040 Salix purpurea SapurV1A.0649s0040 I 0.608
Pavir.Aa00335 Panicum virgatum Pavir.Aa00335 I 0.608
Gorai.013G100200 Gossypium raimondii Gorai.013G100200 I 0.608
Gorai.005G150100 Gossypium raimondii Gorai.005G150100 I 0.608
cassava6464.valid.m1 Manihot esculenta cassava6464.valid.m1 I 0.608
GRMZM2G126646 Zea mays GRMZM2G126646 I 0.608
Traes_6DL_8D95F127B Triticum aestivum Traes_6DL_8D95F127B I 0.608
TCM_044944 Theobroma cacao TCM_044944 I 0.608
BRADI3G57567 Brachypodium distachyon BRADI3G57567 I 0.608
Ca_18028 Cicer arietinum Ca_18028 I 0.608
GRMZM2G118063 Zea mays GRMZM2G118063 I 0.608
Cla018935 Citrullus lanatus Cla018935 I 0.608
GRMZM2G145690 Zea mays GRMZM2G145690 I 0.608
GSMUA_Achr5G14100_001 Musa acuminata GSMUA_Achr5G14100_001 I 0.608
MLOC_15014 Hordeum vulgare MLOC_15014 I 0.608
MTR_6g477820 Medicago truncatula MTR_6g477820 I 0.608
POPTR_0015s05050 Populus trichocarpa POPTR_0015s05050 I 0.608
PRUPE_ppa015345m2g Prunus persica PRUPE_ppa015345m2g I 0.608
Si016483m.g Setaria italica Si016483m.g I 0.608
Sb04g034580 Sorghum bicolor Sb04g034580 I 0.608
Pm025254 Prunus mume Pm025254 I 0.608
VIT_17s0053g00780 Vitis vinifera VIT_17s0053g00780 I 0.608
GLYMA16G34350 Glycine max GLYMA16G34350 I 0.608
GLYMA09G29810 Glycine max GLYMA09G29810 I 0.608
mgf001299m Mimulus guttatus mgf001299m I 0.608
Cucsa.112320 Cucumis sativus Cucsa.112320 I 0.608
TCM_011330 Theobroma cacao TCM_011330 I 0.607
Eucgr.H00609 Eucalyptus grandis Eucgr.H00609 I 0.607
chr1.CM0088.1030.nc Lotus japonicus chr1.CM0088.1030.nc I 0.606
GRMZM2G001289 Zea mays GRMZM2G001289 I 0.606
Aquca_005_00546 Aquilegia coerulea Aquca_005_00546 I 0.605
PGSC0003DMG400002394 Solanum tuberosum PGSC0003DMG400002394 I 0.605
Solyc08g076370.2 Solanum lycopersicum Solyc08g076370.2 I 0.605
mgf016401m Mimulus guttatus mgf016401m I 0.605
LPERR04G18060 Leersia perrieri LPERR04G18060 I 0.605
Solyc02g080260.2 Solanum lycopersicum Solyc02g080260.2 I 0.605
evm.TU.supercontig_90.5 Carica papaya evm.TU.supercontig_90.5 I 0.605
PK14673.1 Cannabis sativa PK14673.1 I 0.605
gene13751-v1.0-hybrid Fragaria vesca gene13751-v1.0-hybrid I 0.605
Ca_11470 Cicer arietinum Ca_11470 I 0.605
30068.m002643 Ricinus communis 30068.m002643 I 0.605
MTR_5g029320 Medicago truncatula MTR_5g029320 I 0.605
LjSGA_028083.1 Lotus japonicus LjSGA_028083.1 I 0.605
PGSC0003DMG400002076 Solanum tuberosum PGSC0003DMG400002076 I 0.605
mgf006361m Mimulus guttatus mgf006361m I 0.603
Ciclev10019153m.g Citrus clementina Ciclev10019153m.g I 0.603
evm.TU.supercontig_7.137 Carica papaya evm.TU.supercontig_7.137 I 0.603
LjSGA_091885.1 Lotus japonicus LjSGA_091885.1 I 0.603
HDG3 Arabidopsis lyrata Al_scaffold_0125_1 I 0.603
cassava38731.m1 Manihot esculenta cassava38731.m1 I 0.603
gene09297-v1.0-hybrid Fragaria vesca gene09297-v1.0-hybrid I 0.603
SELMODRAFT_140884 Selaginella moellendorffii SELMODRAFT_140884 I 0.601
Bra015996 Brassica rapa Bra015996 I 0.601
SELMODRAFT_230527 Selaginella moellendorffii SELMODRAFT_230527 I 0.601
SELMODRAFT_450553 Selaginella moellendorffii SELMODRAFT_450553 I 0.601
Thhalv10018189m.g Eutrema salsugineum Thhalv10018189m.g I 0.601
Bo6g116760 Brassica oleracea Bo6g116760 I 0.601
SELMODRAFT_450554 Selaginella moellendorffii SELMODRAFT_450554 I 0.601
PK19449.1 Cannabis sativa PK19449.1 I 0.600
Eucgr.E04108 Eucalyptus grandis Eucgr.E04108 I 0.600
MDP0000046392 Malus domestica MDP0000046392 I 0.600
Pm009758 Prunus mume Pm009758 I 0.600
gene19572-v1.0-hybrid Fragaria vesca gene19572-v1.0-hybrid I 0.600
PRUPE_ppa001875mg Prunus persica PRUPE_ppa001875mg I 0.600
Bo6g087810 Brassica oleracea Bo6g087810 I 0.600
MDP0000765473 Malus domestica MDP0000765473 I 0.600
Ciclev10014424m.g Citrus clementina Ciclev10014424m.g I 0.600
MDP0000840574 Malus domestica MDP0000840574 I 0.600
orange1.1g045292m.g Citrus sinensis orange1.1g045292m.g I 0.600
Gorai.008G293300 Gossypium raimondii Gorai.008G293300 I 0.599
Lus10031321.g Linum usitatissimum Lus10031321.g I 0.599
Lus10031892.g Linum usitatissimum Lus10031892.g I 0.599